RNA id: TCONS_00021632


Basic Information

Item Value
RNA id TCONS_00021632
length 770
lncRNA type retained_intron
GC content 0.45
exon number 4
gene id XLOC_011099
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53247831 ~ 53259409 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gGTGATGGCCAGTGCAGATATATCGATGGATATTCAGAGGCATTCAGACACAGCGGGTGATCAAAATCCGCTAATCAAATATTATCGTGCCAGTGAAGTTATGCCTGCTCCAGTGCCAGCGCTCAACACACTGCTCAGAAAAGGCCCTGCAACCTGCGctGCCATTCAGGCGTCCAGTGGGATTCTGAGTTTGGGAATCGGAGTCGTGTTTGCAGCTTCATGGGACATCGGGTTCAATTTACTGACTTTATTCAGAATTCCCATCGTCACTGGAGTAATGTTTGTGGTGGCTGGAATCCTGTCAAATCTTCTGTACAAACACCCAGAGCTTCTGCACGTCAGTGTCTGCATTTACACATGTGTATTTCCTATAAATATACAGCATCCAGAAAAATATTCTTCATTTTTTCCCCAGACCTGCTTCATTGCAAACATCCtatgtctgtgtgtttctgcGATCGGTGCAATTCTTCTGATAGTTGATCTTCAACCAGGAGGAAATCAAATCCAGCAGAAGATGGAGGTTCTGATTCTGTGTGTGACTCTGATGGACATAATCATCGCCGGTGTGCTAATTTTCTGGTTCTACCGTGAGAAACGTGGCCCCAAAAAGTGACTCAGTGGTTTCTGCTCTCGTACGCTTCAACAAAAATAACAGAAGTCAAGAACTCCAGAAAGCAGAAGCTACTTCAGATGCAGTTCACACATCAAGCATTTCTCAGACTCTTAGCAGCCAGACGAGAGATGTGGAGGATTTGGCTCGGAAATGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-414 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000157268

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021624 lncRNA downstream 522579 52724580 ~ 52725361 (-) False XLOC_011094
TCONS_00021848 lncRNA downstream 559495 52685610 ~ 52688445 (-) True XLOC_011093
TCONS_00021847 lncRNA downstream 561623 52684758 ~ 52686317 (-) False XLOC_011093
TCONS_00021846 lncRNA downstream 685032 52557028 ~ 52562908 (-) True XLOC_011092
TCONS_00021845 lncRNA downstream 707804 52534517 ~ 52540136 (-) False XLOC_011091
TCONS_00022274 lncRNA upstream 219676 53474458 ~ 53480969 (-) False XLOC_011100
TCONS_00022275 lncRNA upstream 219676 53474458 ~ 53481166 (-) False XLOC_011100
TCONS_00022276 lncRNA upstream 219676 53474458 ~ 53481183 (-) False XLOC_011100
TCONS_00022279 lncRNA upstream 219676 53474458 ~ 53481233 (-) False XLOC_011100
TCONS_00022280 lncRNA upstream 219676 53474458 ~ 53481233 (-) False XLOC_011100
TCONS_00021629 mRNA downstream 281075 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021630 mRNA downstream 281129 52954791 ~ 52966811 (-) True XLOC_011098
TCONS_00021628 mRNA downstream 331692 52901490 ~ 52916248 (-) True XLOC_011097
TCONS_00021627 mRNA downstream 368199 52875093 ~ 52879741 (-) True XLOC_011096
TCONS_00021626 mRNA downstream 426917 52786644 ~ 52821023 (-) True XLOC_011095
TCONS_00021636 mRNA upstream 478932 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021637 mRNA upstream 662633 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021638 mRNA upstream 764674 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021639 mRNA upstream 912150 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021640 mRNA upstream 912150 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021617 other downstream 1300159 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 1492434 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 2286578 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021603 other downstream 2312634 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021599 other downstream 2609154 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021634 other upstream 388038 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 396120 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021650 other upstream 1510719 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 1530955 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

//