RNA id: TCONS_00022289


Basic Information

Item Value
RNA id TCONS_00022289
length 437
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id XLOC_011104
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53686314 ~ 53699443 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacgaggaggaggaagaggagggacAGGGTGAGGAAGAGGGAAAATCTGAGCAGAATGGCGGTCGGCAGGGCTCACAGGCAGAGCAATGGCCTGACCGTGATGGAAAACACCTCTGTTATACACAGCTTTCAGCAGCTCTCCATTCTCATGCAAATCCATTGTGTTCAAACCCTGCATTCATCAGCCGGACACTACAGCTGCAGATGCTGGATACTAAAGGTCACCCTCTAGTGGAGGAACAGGAGAACAGCTCATCTACGAGATGCATCTGCAAGCATGAGGGAGGCTGAAGCCGGCGAGCGTGAAGCTGAGGATCATCCAGGAGCTCATGGTGCTGTTTCAGGATCAGCTCTTCTGTGTGGACACAACATTAGCAGAGCGGGATCTTAGGACTGGAGGAGGGTCTCTGAACGCCCCCGACAGCTGAAACACACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022288 lncRNA downstream 33845 53650902 ~ 53652469 (-) False XLOC_011103
TCONS_00021849 lncRNA downstream 40408 53640246 ~ 53645906 (-) False XLOC_011102
TCONS_00022286 lncRNA downstream 49192 53585707 ~ 53637122 (-) False XLOC_011101
TCONS_00022287 lncRNA downstream 49205 53635082 ~ 53637109 (-) True XLOC_011101
TCONS_00021633 lncRNA downstream 99958 53585707 ~ 53586356 (-) False XLOC_011101
TCONS_00021850 lncRNA upstream 166851 53866294 ~ 53867992 (-) True XLOC_011106
TCONS_00022290 lncRNA upstream 212464 53911907 ~ 53979683 (-) False XLOC_011107
TCONS_00022291 lncRNA upstream 222741 53922184 ~ 53925020 (-) False XLOC_011107
TCONS_00022292 lncRNA upstream 222741 53922184 ~ 53979683 (-) False XLOC_011107
TCONS_00022293 lncRNA upstream 226385 53925828 ~ 53979683 (-) True XLOC_011107
TCONS_00021631 mRNA downstream 426905 53247831 ~ 53259409 (-) False XLOC_011099
TCONS_00021629 mRNA downstream 719449 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021630 mRNA downstream 719503 52954791 ~ 52966811 (-) True XLOC_011098
TCONS_00021628 mRNA downstream 770066 52901490 ~ 52916248 (-) True XLOC_011097
TCONS_00021627 mRNA downstream 806573 52875093 ~ 52879741 (-) True XLOC_011096
TCONS_00021636 mRNA upstream 34271 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021637 mRNA upstream 217972 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021638 mRNA upstream 320013 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021639 mRNA upstream 467489 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021640 mRNA upstream 467489 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021635 other downstream 30775 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 36319 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 1738533 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 1930808 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 2724952 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 1066058 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 1086294 54785737 ~ 54786983 (-) False XLOC_011122