RNA id: TCONS_00021850


Basic Information

Item Value
RNA id TCONS_00021850
length 1257
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_011106
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53866294 ~ 53867992 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtcgctcttggctagttttaacagcgacggcactgtaggctagttttcaaacagcagacggtgctctaggctagttttaacagtagatggcgctctaggctagtgtttaacagcagatggcgctctaggctagtttttaacagcagatggcgctctaggctagtttttaacagcagatggcactctaggctagtgtttaacagcagatggcactctaggctagtttttaacagcagatggccctctaggcaagtgtttaacagcagatggcgctctaggctagtttttaacagcagatggcgctctaggctagtgtttaacagtagacggtgctctaggctagtgtttaacagcagagggcgctctaggctagtgtttaacagcagacggcactctaggctagtgtttaacagcagagggcgctctaggctagtgtttaacagcagatggcgctctaggctagtgtttaacagcagacggcgctctaggctagtgtttagcagatgacgctctaggctagtgtttaacagcagatagcgctctaggctagtgttaaacagcagacagcgctctaggctagtgtttaacagctgaCATCGCTCTAGGCTCGTTTTTAAACAGCTGacatcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagctgacggcgctctgggctagtgtttaacagcagatgttgctctaggctagtgtttaacagcagatggcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagcagatgttgctctaggctagtgtttaacagcagatgttgctctaggctagtgtttaacagcagatgatgttgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagctgaCATCGCTCTAGGCTCGTTTTTAAACAGCTGACatagctctaggctagtgtttaacagcagacggcgctctaggctagtgtttaacagcagacggcgctctaggctagtgtttaacagcagatggcgctctaggctagtgtttaacagcagatggcgctctaggcttttAATTGctaattttaacagcagatggcgctctaggctagttttcgaCAGCAGACATTGCTcaaggctagtgtttaacagcagacggcccTCTAGGCTAGT

Function

GO:

id name namespace
GO:0045475 locomotor rhythm biological_process
GO:0048512 circadian behavior biological_process
GO:0007622 rhythmic behavior biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022289 lncRNA downstream 166851 53686314 ~ 53699443 (-) True XLOC_011104
TCONS_00022288 lncRNA downstream 213825 53650902 ~ 53652469 (-) False XLOC_011103
TCONS_00021849 lncRNA downstream 220388 53640246 ~ 53645906 (-) False XLOC_011102
TCONS_00022286 lncRNA downstream 229172 53585707 ~ 53637122 (-) False XLOC_011101
TCONS_00022287 lncRNA downstream 229185 53635082 ~ 53637109 (-) True XLOC_011101
TCONS_00022290 lncRNA upstream 43915 53911907 ~ 53979683 (-) False XLOC_011107
TCONS_00022291 lncRNA upstream 54192 53922184 ~ 53925020 (-) False XLOC_011107
TCONS_00022292 lncRNA upstream 54192 53922184 ~ 53979683 (-) False XLOC_011107
TCONS_00022293 lncRNA upstream 57836 53925828 ~ 53979683 (-) True XLOC_011107
TCONS_00022294 lncRNA upstream 423670 54291662 ~ 54293613 (-) False XLOC_011111
TCONS_00021636 mRNA downstream 66247 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021631 mRNA downstream 606885 53247831 ~ 53259409 (-) False XLOC_011099
TCONS_00021629 mRNA downstream 899429 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021630 mRNA downstream 899483 52954791 ~ 52966811 (-) True XLOC_011098
TCONS_00021628 mRNA downstream 950046 52901490 ~ 52916248 (-) True XLOC_011097
TCONS_00021637 mRNA upstream 49423 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021638 mRNA upstream 151464 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021639 mRNA upstream 298940 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021640 mRNA upstream 298940 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021641 mRNA upstream 487850 54355842 ~ 54357200 (-) True XLOC_011112
TCONS_00021635 other downstream 210755 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 216299 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 1918513 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2110788 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 2904932 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 897509 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 917745 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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