RNA id: TCONS_00022290


Basic Information

Item Value
RNA id TCONS_00022290
length 2435
lncRNA type sense_over
GC content 0.37
exon number 3
gene id XLOC_011107
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53911907 ~ 53979683 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtttcagtgtCTTCAATCTTCACGGTGGCGGGTGTGAAGTTACAGAGTGAATCTGGCGACAGCAGTAAGAGCAACAGCCACGGCAGAGGAACAGCCAACAGCAAACACTGAGACACACACAGGTTGGCGCACTCAGCTATCAAGACAAGAAAATGACGTAAAAAGAGActtcatgtttatttaaataatttcaggCTGATTCGACCGGCCATGTGGGACTGAAAGCAACAAGAACGTGGAGTAACAAACATTCCCACATCGACGGCATGCAAACTATGTCGGACGTCAAAAAGGCAATTAACACGAACTGTTTGTGTATGTAGCTACCTATGTACGAATGTTTGTACAGTTAAATATATACGTGTCTATCTTGGAGAACAAACCAAATGCCCTCCTCCCGTGCACAGTCACGCATTAACGATTTCGCATTTCCTGCAAACTTCCACATTGTTGGCTATGGTACGATTTAATAACGTGACAATAACTAATAATCGTAATAACGATGCGGTTGCATTGGCTCACTGCAGGGACTGCGATCAAGCAATTAACAGTAATGGAGGAGATCTGCGTACGTGAGTTTCTCTGTACGTCTGTTCGTGCGTCTACATGTTAAACACAGGCAATACACTTGCACTGGTGCTACTGTGCACGAGGAAGAAATTCGCTAGTCTACGTTTGGAAATGAATCTGTTTTCGTTGTTTCGTCCAAAGGCCCATGACAATCTTTGAATAAATTGCACTCACTGAGATTACGTTTACATGACAACGATGTAGCTAAAGAAATGGAAACCTTTTTCGTTTGCGGAAAAAAGGTTTCAcatttgcaaatttaaaaaatctgGATTTACAAACGGATGAAAATGGTCAAAAATGCTGTATTGCGTATTCCAAGTTAACGCAATCTAACGGTAGTTCGTAACTTTtttgtttagtggctaattcgtatcaaCTTGTATGATCTCTTTTGCACATTTTAGTATGGTTTGCTCCTCCCCAATAAGGGGTGGAGTTTGAGGCCACACCtcctttaaaaatgtacattttcatatAACGAAATCGTttaaatttgtacgaattagtcaCTTTTCTGATaatacAGTCacatatttgacccaaatttaggttaaaataacccagtgTTGTTTTTAGAGTAAGCTTCAAAGCTtctgcttttgtgtttaaaaagaatgaaactcataaagctttAGAACCGCTTGAGAATgagttttatttgacatttttcggtgaactgcccctttaaatgaTCAGTATCAGTGTTAGCCACTGAAAACCCCATTTTGCTAAAGCACTAAATAagaattaataatcaataattcttCAAACTGTGTCCAGCCATCATGTGCTgcctaaacaaaacaaatactgaGTGTCAGAAATGTTAATCACTGTGAAAAACATCcgtaaatcagcagttttctgtattttgtgattcatcatttcattttacCCCATTTATTTCTGcgtttgagttgcattatgggatcttaatctttcttccagcaacttttaaccctgaaaagtgtgaaaaagtgacttttattgtcattttagtagtttaaattgatctattgtctgggttggtgttgtatattacactataaacaccttgtaataaactgcagcacattttctattattttacagaagtattttatatatataatgcttcCTACACATTATATTTTTACTAAGATGTCACTAaaggtcactttgttaaactgtagagttaaactttcaacatcagaagtggacagagcagagatcaacatcccataatgcagttcaccactGTAAATAAGCACTTGTGCATCACTAAACACACTACAGTAACTGTTCATCATCAGATCTGTTTCACAGTGTGTGGCAAATCTCCTGCTAATGAATGTTGATGGTTTGATTGTGGGAGATCTTAAACTCGGCTCTTTATCAGATGCATGGAGCAGAGATTGATTCGGTTTTCTACAGCGCTGACGTCTGTTATTTTCCTCTCTCTCATACTTCTGCTTGTGATACTATCAGAAACCCTTTATATTTATAGACTATAGTTTATATATTATTCACTGCTTTGAAGAATAAACTTCACATTTGTACAAAAGGCTCCTTTGTTATGGAAAATGAGTTTGTTCTGAGGGTTTCCTTGCTGCTTAAACAGAACCTGAAAACACATTCtgtaaaaaagtgttgcatgcagaactgttgcaaacaatttatttgtgttcaatttaaactaacaaattaagtttaataatgtttaacttaattcgtttgtttaaattcaacacaaataaattgtttacaaccacttaacgtaaaaaaattgagtaaatgcaag

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006936 muscle contraction biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021850 lncRNA downstream 43915 53866294 ~ 53867992 (-) True XLOC_011106
TCONS_00022289 lncRNA downstream 212464 53686314 ~ 53699443 (-) True XLOC_011104
TCONS_00022288 lncRNA downstream 259438 53650902 ~ 53652469 (-) False XLOC_011103
TCONS_00021849 lncRNA downstream 266001 53640246 ~ 53645906 (-) False XLOC_011102
TCONS_00022286 lncRNA downstream 274785 53585707 ~ 53637122 (-) False XLOC_011101
TCONS_00022294 lncRNA upstream 311979 54291662 ~ 54293613 (-) False XLOC_011111
TCONS_00022295 lncRNA upstream 311979 54291662 ~ 54295771 (-) False XLOC_011111
TCONS_00022298 lncRNA upstream 311979 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022297 lncRNA upstream 311979 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022296 lncRNA upstream 311979 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00021636 mRNA downstream 111860 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021631 mRNA downstream 652498 53247831 ~ 53259409 (-) False XLOC_011099
TCONS_00021629 mRNA downstream 945042 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021630 mRNA downstream 945096 52954791 ~ 52966811 (-) True XLOC_011098
TCONS_00021628 mRNA downstream 995659 52901490 ~ 52916248 (-) True XLOC_011097
TCONS_00021638 mRNA upstream 39773 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021639 mRNA upstream 187249 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021640 mRNA upstream 187249 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021641 mRNA upstream 376159 54355842 ~ 54357200 (-) True XLOC_011112
TCONS_00021642 mRNA upstream 422627 54402310 ~ 54405976 (-) False XLOC_011113
TCONS_00021635 other downstream 256368 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 261912 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 1964126 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2156401 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 2950545 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 785818 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 806054 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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