RNA id: TCONS_00021639


Basic Information

Item Value
RNA id TCONS_00021639
length 839
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_011110
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54166932 ~ 54187486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGCAACACTCTGACTTCCTGTGAGACCTGCCTCGCCAACGTCTCGGTAAGAGTGCAAAAAAACCACTCATTTACAGGTTATTAGCTGTCGTTGATgttgaacagtgtgtgtgtgtttgtgtgtgtttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttctctgcagtatatgtgtgtattattattattattattgttgatgatgatctgtgtgtgtgtgtgtgtgtgtgtgtttctctgcagtatatgtgtgtattattattattattattgttgatgatgatctgtgtgtgtgtgtgtgtgtgtgtttctctgcagtaaatgtgtgtattattattattgttgatgatgatcagtgtgtgtgtttatctgcactgtttgagtgtgtattattgtgatgatgatgatgatgatgatgatgatggtgtgtgtgttgcagtgtCTGTGGTGTTTGACGAACAGCAGCTGCTCTGATTATCCAGTGTCGTATATCATTCCTCCATCATCCGTCTGTAAACTCTCTCAGGCCCGATGGGGCGTCTGCTGGGTGAACTTCGAGGCTCTGATCATCGCTATGGCTGTGGTTTTGGGTGTTTTGCTGCTGGCCGTGAccgtctgctgctgctgctgttgctgtaAACGCAGATCATCATCCAGCTTCGATCGTGACGATGAGCAGTTCGCCCGCAGGAGAGAGGAGATACGACAGAGAGCAGACGAGCGGAGAGTGGAGAGGAAAACCAAGCATGACGAAATCCGCAAGAAGTATGGACTCATCCCAGACTCCGATCATCCATACAGCAAGTTCGAGAACGAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186989

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022290 lncRNA downstream 187249 53911907 ~ 53979683 (-) False XLOC_011107
TCONS_00022292 lncRNA downstream 187249 53922184 ~ 53979683 (-) False XLOC_011107
TCONS_00022293 lncRNA downstream 187249 53925828 ~ 53979683 (-) True XLOC_011107
TCONS_00022291 lncRNA downstream 241912 53922184 ~ 53925020 (-) False XLOC_011107
TCONS_00021850 lncRNA downstream 298940 53866294 ~ 53867992 (-) True XLOC_011106
TCONS_00022294 lncRNA upstream 104288 54291662 ~ 54293613 (-) False XLOC_011111
TCONS_00022295 lncRNA upstream 104288 54291662 ~ 54295771 (-) False XLOC_011111
TCONS_00022298 lncRNA upstream 104288 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022297 lncRNA upstream 104288 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022296 lncRNA upstream 104288 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00021638 mRNA downstream 88270 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021637 mRNA downstream 247817 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021636 mRNA downstream 366885 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021631 mRNA downstream 907523 53247831 ~ 53259409 (-) False XLOC_011099
TCONS_00021629 mRNA downstream 1200067 52926139 ~ 52966865 (-) False XLOC_011098
TCONS_00021641 mRNA upstream 168468 54355842 ~ 54357200 (-) True XLOC_011112
TCONS_00021642 mRNA upstream 214936 54402310 ~ 54405976 (-) False XLOC_011113
TCONS_00021643 mRNA upstream 215137 54402511 ~ 54405037 (-) True XLOC_011113
TCONS_00021644 mRNA upstream 263033 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021645 mRNA upstream 271761 54459135 ~ 54465271 (-) False XLOC_011116
TCONS_00021635 other downstream 511393 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 516937 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2219151 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2411426 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3205570 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 578127 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 598363 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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