RNA id: TCONS_00022296


Basic Information

Item Value
RNA id TCONS_00022296
length 4074
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_011111
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54291662 ~ 54296444 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGGCTCCTATAAAAGGTCACAGGAGACATTTAATAAAGTCTGCAATgcaaaaaatgtagatttttgtagtgtttttttgttttttttccagttatGATATTTAGAAATCAAGATACATTTTGAAAATTTCTTGTTATTCTTGAAAGATTCTGAATTAAGTTCATTTTTATAGTTAAAACAAGATAAATGACCTCTTAATTAGGTCTTTTCCACTGTGAATGAAATCCATATAAGAAATGATCATCAAGCCCCGCCTATTACGTCCAGAGAGGAGGAGCTGCACCTCAAGCTCCACCCATTCTGTCTAGATAGGTGTTTTAAATCAAGCCGcaactattcaccttattctccgcagacgagtgggcgctgccatttgaatctttttggcttgagacttccggtctcagtcacttccattcattttttgacattaaaaactgctcattacgctgcttgatgatGCAATtcgatattttcttattatattattctacttggtctgtatagtcgtttaaacatttgtttgtagagcaagtagtttgaccgttttctgccatttattattcctagtcatttctcccataggcgactgaatcggaagttctaagacaatcgcgaaaacaggtgcacttccgcattttaaaataaggtcaataacatTCAGAAAAGCAAAGCTGGACATTAAGCTCCACCCTTTTTGTTCAGACAGGTAAAGTGTTAAATCAAGGAGGAGGAGCTGTATATCAAAATTCTGTCCAAAGGATGGAGTTGTAAATCAAACCTGCCTATAATACCCAAAGAGGAGGTGCTGTTTAACAAGCTCCAACCATTTGTCTGGGAAGGTGGAGTTTTAAATCAAGCCCCGCCTATAATAAGGAAAGAGGAGGTGCTCTATAATAAGCTCCACCCATTTTGCCCAGACAGGTTTAGTTTTAAATCAAGCTCCACCATTAAATGTCCAAAAAGGAGGAGCTGGATATTAAGCTTCACCCATTTTGTCCAGATAGGTGGAGTTTTAAAACAAGCCCCACCAATGATGTGAAAAGAGGAGGTTCTTTATAATAAGCTCCACCCATTTTGCCCAGACAGGTATAGTATTAAATCAAGCCCAACtattaaatgtacaaaaaggAGGAGCTGGATTAAGCTCCAACCATTTTGTCCAGACAGGTGGAGTTTTAAAACAAGCCCTGCCAATAAATTCGAAAGAGGAGGTGCTCTATAGCAAGCTCCACCCATTTTGCCCAGACGTGTGAATTTTCAAATCAAGCCCTGTCGATAAAGTCCAAATAGGAGGTGATGCATATCAAGCTCCACCCATTTTGTCCAGATAGGTGTTTTAAATCAAGCCCCGCCTTTAATATTCAGACGCAAAGCTGAACATTAGGCTCCACCCAATTTGTCCAGATAGATGGAGTTTTAAAACAAGCCTCGACTATAATAATCAAAGAGGAGGTGCTCTATAACAAGCTCCACCCATTTTGCACAGATAGGTGGATTTTTAAATCAAGCCTCGTCTTTAATGTCCAAAGAGGAGGTACTGTATATCAAGCTCCACCCATTTTGTCTACCAAGGAGGCATTTTTAATCAAGCCCCACCAATAATGCCCAAAGGGGAGGGGCTAGACATCATGCTCCACCCATTTTGTCAGAATAAGTATAGTTTTAAATCAAGCCCCGCCTATAATGTCCAGTGAGGAGCCATATGGAGAAGGAGAAATGTCTGCATTGACAAAATCTTCATTGTAGAAAGagctaaagaaataaagattgagttgaaatatatttttctgaCCCCATTGGCtcatatttttcttgttttaaccATAAATACATTTTGATTACTGCTTTACGGTCTGAAAACAAGACCCTATGTATGCATTTAATAAAACCTGGCTGTCTATGCAGTAAAAAACATTGATATACCCTATCCAAGACCACTTTTAGTCTGCTCCCATTGGAAAGGATGGATCAGAGTCAGATACTGCAGCTTCAGTCACAACTCTCTAGGTCATCCCATTACATGCAGAGCAGTAGGACAAGCTCCactcattaaacattaaaatcaaGCTCCACCCAGTATGTCCAGATATAGGTGGAGTTTTACATCAAACCCCACCTATTATGATAGGAGTTTTACATTAAGCTTCACCCATTATGTCCAGAGAGGTGGAGTTTTACATCAAACCCCACCTATTGTGTCCAGATAGGTGTTGTTTTACATCAAGCCCCACCCATTATGTCCATACAGGTGGAGTTTTACATCTTGTTCCACTCATTACATCCTGATAGGTGGAGTTTTACATCAAGCCCCACCCATTATGTCCATACAGGTGGAGTTTTACGTCATGTTCCACTCATTACATCCTGATAGGTGGAGTTTCACATATCAAGCCCCACCCATTATATCCTGATAGGTGGGGTTTTACATCAAGTTCTGCTCATTACATCCTAATAGGTGGAACTTAATATCAAGCCTTGCACATGATGTCCAGAGAGGAGGAGCTAAAAATCAAGTGCTGCCTTTTTTGTCCAGACAGGAGGAGCTTTACATCAAGCTACGCCCGTGATGTCCAAAGATAACGAACTGGCCATCAAGTTGTGCTCATTACTTCCAGAGAGGTGGAGACAGATCAACTCAAAGACGAGGAGCTAGCCATCAAGCCCCACCTATTTATGTCTAGAGAGGCACAATTGGACATCAAGCCCCACCCATAATATCCTGATAGGTGGAGCTTTACATCAACCCCCAAGTCCCGCCTATAATGTCCAGAGAGGAGGAGCTAAAAATCAAGTGCTGCCTTTTATGTCCAGAAAGGAGGAGCTTTACATCAAGCCCCACCCATTATACCCTAATAAGCAAAACTTTACATCAAGACCCGCCCATTatgtgcagagagagagagagagagctttaaATCAAGCCCTGCCCATGAGGTCCAGAGAGGAGGAGCTGAAAATCAAGTGCTGACTTTTATGTCCAGATAGGAGGAGCTCTACATCAAGCCCCACCCATTATACCCTAATAAGCAGAGCTTTACGTCAAGCCCCGCCCATTATCTCTAGAAATGGAGAGCTTTACATCAAGCCCCGCCCATGATGTCCAGAGAGGAGGAGCTGAAAATCAAGTGCTGCCTTTTATGTCAAGATAGGAGGAGCTTTACAtcaagccctgcccatgatgtcCAAAGAGGAGGGGCTGAAAGTGAAGCTCCACCCTTTTTAAACAGAAGAATTTTGCTGACAAGTAAACATTCATTTCTTGTTCCAACAACATCTAGAAAGAGTCAACGCTGTAAATTTGCATGTACAGAACGTGTAACAGCACAAAAGCAAGCTTAAAATGAAGTTAAACCAAACGAATGTTAAGATATTTGTGTTGAAAATGACAATAGTTTGCAGTTCATggttatgaaagaaaaaaatgttacttgcaaataaataaatgttaaaataaaatagataaaacgtTTTATTTCATGTACTATTATATGCCGAATGccacatttgacatttttatataaaGCTGATggttcaaataaattaaatatcccaaaaattaataattatattacaaaatCTGTTCAAATGTAACTACTAATATAACTTGTAagcatttctttctttatttaaatgtctACGTTTTTTTTGTTCTGGCGGAGCTGCTTCGTGCTTATACACGAGTTCTGGTCAAACTCTTGATGAAAGAGACGACGCATCATATTTACATCATGTTATTGCATATTAACATGATGTTATTTACAGCATACGGTGTGATTCAGACTCATTGGCAGGGAAATGTTTATTCCTCCTGGACTGAACTAGTGCAGTATCAGCACATCTGACAGCAGCTCCAGCTCCCGTTATAAACACTGCCTGAAATCCTCAATACACACATCATTAAATATGCAGAGATTATTAAACtggcccaatgtgtgtgtgtgtctgtgtgtctgcatatgtttgtgtgtgtttgtgtgggtgtgtgtgttcaacagtgCAGGATCTTGATGAAGGCCTTGCGGAACTCGATGTTGAAGGTGGTGTAAATGACTGGGTTGACGGCGCTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022290 lncRNA downstream 311979 53911907 ~ 53979683 (-) False XLOC_011107
TCONS_00022292 lncRNA downstream 311979 53922184 ~ 53979683 (-) False XLOC_011107
TCONS_00022293 lncRNA downstream 311979 53925828 ~ 53979683 (-) True XLOC_011107
TCONS_00022291 lncRNA downstream 366642 53922184 ~ 53925020 (-) False XLOC_011107
TCONS_00021850 lncRNA downstream 423670 53866294 ~ 53867992 (-) True XLOC_011106
TCONS_00022300 lncRNA upstream 140956 54436976 ~ 54439156 (-) True XLOC_011114
TCONS_00022301 lncRNA upstream 230389 54526409 ~ 54528701 (-) False XLOC_011118
TCONS_00022302 lncRNA upstream 230389 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00022303 lncRNA upstream 230389 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022304 lncRNA upstream 298890 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00021640 mRNA downstream 104176 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021639 mRNA downstream 104288 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021638 mRNA downstream 213000 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021637 mRNA downstream 372547 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021636 mRNA downstream 491615 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021641 mRNA upstream 59822 54355842 ~ 54357200 (-) True XLOC_011112
TCONS_00021642 mRNA upstream 106290 54402310 ~ 54405976 (-) False XLOC_011113
TCONS_00021643 mRNA upstream 106491 54402511 ~ 54405037 (-) True XLOC_011113
TCONS_00021644 mRNA upstream 154387 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021645 mRNA upstream 163115 54459135 ~ 54465271 (-) False XLOC_011116
TCONS_00021635 other downstream 636123 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 641667 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2343881 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2536156 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3330300 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 469481 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 489717 54785737 ~ 54786983 (-) False XLOC_011122