RNA id: TCONS_00021641


Basic Information

Item Value
RNA id TCONS_00021641
length 911
RNA type mRNA
GC content 0.62
exon number 3
gene id XLOC_011112
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54355842 ~ 54357200 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTATGCCGGGCACGCTGGTGGTGTGTCTGCCGCAGATCAGTGTGTTGAGCGCAGGACACCGCCGCATGGAGCCGCTGCAGGACGGCCCGCTCACTGTGCCCAGACCCGTGCTGGAGGAGGGTACGCACGCTTCTCtctacatgagtgtgtgtgtgagtgtataacaagagtaagtgtgtgtgtgtgtacatatatatgatgtgtgtgtgtgcaggcggtGCGTTCCCCTGGACGGTGTGTGTGCGTCAGCTGAGTGTGTATTCTCTGCTGGGTCATCAGCGCTCTCTCAGTGTGGTGGATCCTCTGGGCTGCACCTCCACACTGGCCCTCACTGCACCCCGACTGCAGCCGGCCGCCCGAGACGCCTTCATCATCTGCCTGCATGTGGACCTGCAGCCGCTGCAGCTGCAGTGCTCCAACCCACAGgtccAGCTGGTGTGTGCTCTGTGGTGCCGCTGGATGCAGATCTTCAGTGTGTTGGAGCGTCTGCAGACTCGAGGAGCTCAGAGAGCGGCTGCGGGTTTCCCAGAATGCTCTGCTCCAGCCGCTGGCCCCGCCTCCCCTGTGCACAGCAGCGCCGGCACCGCCCCGCCCGACACCAGCACCTGCAGCCCGTCTGCTGACCTGGGCACGCCCactgaggctgaCTCTGCGCACACAGACGACCCCGCGGCCGGCGAGACCCTGACCCTGGAGCAGCAGACCTGCAGCATCAGCGGCTCCAGCAGGAGACTCAGCGTCTGGATGCAGTGGATGCTGCCGAGACTCACACTCAAGCTGTTCTCCAGCGAGCCCGCGAGCAGAACCACCggtacacacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacactcacac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170753

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022299 lncRNA downstream 59398 54291662 ~ 54296444 (-) True XLOC_011111
TCONS_00022298 lncRNA downstream 59822 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022297 lncRNA downstream 59822 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022296 lncRNA downstream 59822 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022295 lncRNA downstream 60071 54291662 ~ 54295771 (-) False XLOC_011111
TCONS_00022300 lncRNA upstream 79776 54436976 ~ 54439156 (-) True XLOC_011114
TCONS_00022301 lncRNA upstream 169209 54526409 ~ 54528701 (-) False XLOC_011118
TCONS_00022302 lncRNA upstream 169209 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00022303 lncRNA upstream 169209 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022304 lncRNA upstream 237710 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00021640 mRNA downstream 168356 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021639 mRNA downstream 168468 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021638 mRNA downstream 277180 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021637 mRNA downstream 436727 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021636 mRNA downstream 555795 53733714 ~ 53800047 (-) True XLOC_011105
TCONS_00021642 mRNA upstream 45110 54402310 ~ 54405976 (-) False XLOC_011113
TCONS_00021643 mRNA upstream 45311 54402511 ~ 54405037 (-) True XLOC_011113
TCONS_00021644 mRNA upstream 93207 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021645 mRNA upstream 101935 54459135 ~ 54465271 (-) False XLOC_011116
TCONS_00021646 mRNA upstream 101935 54459135 ~ 54471235 (-) True XLOC_011116
TCONS_00021635 other downstream 700303 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 705847 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2408061 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2600336 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3394480 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 408301 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 428537 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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