RNA id: TCONS_00021642


Basic Information

Item Value
RNA id TCONS_00021642
length 1125
RNA type mRNA
GC content 0.60
exon number 4
gene id XLOC_011113
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54402310 ~ 54405976 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGCAGATcggcggacacacacacacatacacacactctctctctctctctgtctctgtctcagTGACACACACACTCCGCTGTGAGCATGTTCAGACTGTAGTTATGCCTCTGAGCTGAAGTTCCTCGCTCTGTGTGGATTTACAGTCAGACCGCGACCTTCGGCACTGAGGGATCTGCACCGGGAATGGGCAGTAAGACTCTCCCGGCTCCGGTGCCTCTCCACCCGGCGCTGCAGCTCAACTACTCGCTCCTGCAGACACTGAACGCGTTCCCGGTGGCGGTGGATCAGCTGTACGGCCTCAGCGCGCTCCACACCGTGCAGATGAACCGGTGGACGGTGGGCTTCCCGCAGCTGCAGGGCCTGGCGGACCCGCGCTTCCCCGGCGCACTCCCGTTCCCCGCCGCCGCCGCGCATCTGTTGCCGCACAAACACCCGGTGCACCGGAAGGACAGGCCGCGCTTCGACTTCGCCAATCTGGCGGTGGCGGCGACGCAGGAGGACCCGCCGGTGACCGGACAGAGCAGACTGAGCCCGGAGCGCAGACCGGCGCGCGGCAGACTCCCGGCCAAGAGCAAGAAGGAGTTCATCTGCCGGTTCTGCGGGAGACACTTCACCAAATCCTACAACCTGCTGATCCACGAGCGCACACACACCGACGAGCGGCCCTACACCTGCGACATCTGCCACAAGGCCTTCCGGAGACAAGACCACCTGCGGGACCACCGATATATCCACTCTAAGGAGAAACCCTTCAAGTGTCAGGAGTGCGGGAAGGGCTTCTGTCAGTCCAGAACTCTGGCGGTCCACAAGACACTGCACCTGCAGACCTCAAGCCTTTCTGCTGCGGCCGCTGCGGGAAGGTGTTTCGGCGCAACTGCGACCTGCGGCGCCACAGTCTGACACACACACCGCCGCAGCAGGACCCAACCGCACAATAACCATAACCCAACCCAGGACAGCTCGATAGCCCAAAATAACCATAGCACTCACGATCACGGACACACTCCTGCAGGACACACTCACCCCTCAATAACagactcagtgtgtgtgtgtgtgtgtgatgatgatgatgatgatgatgatgatgatgatgtaaataAACGTTTCTTGTTGCTCCTC

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0007275 multicellular organism development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001822 kidney development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001655 urogenital system development biological_process
GO:0033339 pectoral fin development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-183 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within pectoral fin development and pronephros development. Predicted to be active in nucleus. Is expressed in several structures, including gut; intestinal rod; mesoderm; pectoral fin; and pronephros. Orthologous to human OSR2 (odd-skipped related transciption factor 2).

Ensembl:

ensembl_id ENSDART00000055395

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022299 lncRNA downstream 105866 54291662 ~ 54296444 (-) True XLOC_011111
TCONS_00022298 lncRNA downstream 106290 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022297 lncRNA downstream 106290 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022296 lncRNA downstream 106290 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022295 lncRNA downstream 106539 54291662 ~ 54295771 (-) False XLOC_011111
TCONS_00022300 lncRNA upstream 31000 54436976 ~ 54439156 (-) True XLOC_011114
TCONS_00022301 lncRNA upstream 120433 54526409 ~ 54528701 (-) False XLOC_011118
TCONS_00022302 lncRNA upstream 120433 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00022303 lncRNA upstream 120433 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022304 lncRNA upstream 188934 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00021641 mRNA downstream 45110 54355842 ~ 54357200 (-) True XLOC_011112
TCONS_00021640 mRNA downstream 214824 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021639 mRNA downstream 214936 54166932 ~ 54187374 (-) False XLOC_011110
TCONS_00021638 mRNA downstream 323648 54019456 ~ 54078662 (-) True XLOC_011109
TCONS_00021637 mRNA downstream 483195 53917415 ~ 53919115 (-) True XLOC_011108
TCONS_00021644 mRNA upstream 44431 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021645 mRNA upstream 53159 54459135 ~ 54465271 (-) False XLOC_011116
TCONS_00021646 mRNA upstream 53159 54459135 ~ 54471235 (-) True XLOC_011116
TCONS_00021647 mRNA upstream 68645 54474621 ~ 54498109 (-) True XLOC_011117
TCONS_00021648 mRNA upstream 227262 54633238 ~ 54640315 (-) True XLOC_011120
TCONS_00021635 other downstream 746771 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 752315 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2454529 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2646804 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3440948 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 359525 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 379761 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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