RNA id: TCONS_00022301


Basic Information

Item Value
RNA id TCONS_00022301
length 976
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_011118
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54526409 ~ 54532090 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGAAGCGCATGGTCCTGTCTTGCTTTCGtctcagtgttttcattcattttacagACCTTTAATCAACATGTCTGAAGCGGCTGTCAACATTGGCTGGACCCGACTGCATCAGAAGAGCACATTATACAGTGACGGCGGCGGCAGAAGGTCTTTCCGCATCCATGTGGGAGATTTACCATCAGTCTGAAGATCCACACCTGAGAAACTTGAAGATGCAGAACACAGAAGTCCAGTATGGTGGAGCGATAAACGATATCAACATGATCTACAACACAGGGAGCcaatgtgacacacacacacacacacacatacacaccattaCAATAATATGGCATATTATACTTACTTAACTGTTCATTCATgttctttctctgtgtgtgtctttttACAGGTACATGCATTCAAAATAGCGTCAGTGAATGCACATCACACACATGCAGGTAAACTAGACAAGTTAACCAGAACTTAACACCTGGAACAGACCCAGGAGataaaggccccgtttacactagtgcatttagttttaaaacggcgttttagaatgaaagcgatccgcatccacactagTGTCTCAATAGCAGTTTCTGAACCgctctccgtctacaccaaaacgctgaaaacacacatcacgtgaccacacacacacacacacacacacacacacacacatacacactctcgaGCAAGCACTGCAGCCAGGGGCGTAAATCCCAGGGGGCTTGTATCCGTGGCTTGTATAACCCCCCCACTCAAAATTACTCATCTAGTTAACGTTAGCTTGTTGCTAACGCTAAAGCCGTTTCCtatgcattgtttcatttgtgacgacttggcattatgttaacttaatattaacgaccacaattagcatattgtttagctgtgtatttgctaaatgagcactgcTACACTGTGCACactaaccccactgtatttttgtataatcgGTTTCTATTCTGTTTTAAGTGCCTCA

Function

GO:

id name namespace
GO:0090342 regulation of cell aging biological_process
GO:0048869 cellular developmental process biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022300 lncRNA downstream 87253 54436976 ~ 54439156 (-) True XLOC_011114
TCONS_00022299 lncRNA downstream 229965 54291662 ~ 54296444 (-) True XLOC_011111
TCONS_00022298 lncRNA downstream 230389 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022297 lncRNA downstream 230389 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022296 lncRNA downstream 230389 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022304 lncRNA upstream 66209 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00021649 lncRNA upstream 233196 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00021654 lncRNA upstream 258672 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021851 lncRNA upstream 470285 54998986 ~ 54999993 (-) True XLOC_011128
TCONS_00021666 lncRNA upstream 663471 55192172 ~ 55197372 (-) False XLOC_011131
TCONS_00021647 mRNA downstream 28300 54474621 ~ 54498109 (-) True XLOC_011117
TCONS_00021646 mRNA downstream 55174 54459135 ~ 54471235 (-) True XLOC_011116
TCONS_00021645 mRNA downstream 61138 54459135 ~ 54465271 (-) False XLOC_011116
TCONS_00021644 mRNA downstream 70836 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021642 mRNA downstream 120433 54402310 ~ 54405976 (-) False XLOC_011113
TCONS_00021648 mRNA upstream 104537 54633238 ~ 54640315 (-) True XLOC_011120
TCONS_00021651 mRNA upstream 256563 54785264 ~ 54800202 (-) False XLOC_011122
TCONS_00021652 mRNA upstream 256564 54785265 ~ 54800202 (-) False XLOC_011122
TCONS_00021655 mRNA upstream 276114 54804815 ~ 54810464 (-) True XLOC_011123
TCONS_00021656 mRNA upstream 362134 54890835 ~ 54907588 (-) False XLOC_011124
TCONS_00021635 other downstream 870870 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 876414 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2578628 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2770903 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3565047 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 236800 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 257036 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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