RNA id: TCONS_00022304


Basic Information

Item Value
RNA id TCONS_00022304
length 697
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_011119
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54594910 ~ 54597421 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGGCGGAATCTCGGGGCtgctgctgggcgctgctgtAATGGAACATTCTCCTGAGTGTCGCCTGACCTGTTGGTGATTCTGAGCTCTTTGCTCCTGATATAAATCATCACACTTTCCCCTGTGTTTAATTAAAAAGCGCTTACCTGTTGTAGAGATGGAGATTGGTGACCGGAAGTTCCGGAAGATAGAAAAGGTGGAAGGAAACTGAAGCTGTGAGGAAATAAGACATTTCACCGTCATGGACAAGAGAAGTGAAGAGACATGTTGAGTCAATGATCGCAGAAATGTCCTCTTGGAGTATCGAAGTGCTTTGTTCGGTAGATTTATCCAATATTCCGTTACTGGCCGCCGTTGAGACTCTCGCGAGTTCGCGGCTGTGAACAGCTGTTACCGTCACCGAGGATCATCGTGAATATTCCGGTCAAGAAGTGAGATTTGGAGTTTAAAAACACAAAGTGGACGTCCCTCATGCTGCGCTATTATTGCAGGAACTACAGCTTCCTCTGACATCACTTCCTCTGGTGGCAGAATTCCTCATTATTCCTCAAATTAAGACTAAAGGATCCTAGAGTTCCCTCATGAACCGtgattcactcacacacacacacacacacgcacgcacgcacgcacacacacacacacacacacactctcaaacaaacacaaactctcGCACACACACTTGTGTACACGCA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0022607 cellular component assembly biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0090307 mitotic spindle assembly biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0090068 positive regulation of cell cycle process biological_process
GO:0006996 organelle organization biological_process
GO:0051225 spindle assembly biological_process
GO:0048285 organelle fission biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0070925 organelle assembly biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:2000117 negative regulation of cysteine-type endopeptidase activity biological_process
GO:0000280 nuclear division biological_process
GO:0005876 spindle microtubule cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022303 lncRNA downstream 62820 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022302 lncRNA downstream 62890 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00022301 lncRNA downstream 66209 54526409 ~ 54528701 (-) False XLOC_011118
TCONS_00022300 lncRNA downstream 155754 54436976 ~ 54439156 (-) True XLOC_011114
TCONS_00022299 lncRNA downstream 298466 54291662 ~ 54296444 (-) True XLOC_011111
TCONS_00021649 lncRNA upstream 164476 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00021654 lncRNA upstream 189952 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021851 lncRNA upstream 401565 54998986 ~ 54999993 (-) True XLOC_011128
TCONS_00021666 lncRNA upstream 594751 55192172 ~ 55197372 (-) False XLOC_011131
TCONS_00022305 lncRNA upstream 594751 55192172 ~ 55202200 (-) False XLOC_011131
TCONS_00021647 mRNA downstream 96801 54474621 ~ 54498109 (-) True XLOC_011117
TCONS_00021646 mRNA downstream 123675 54459135 ~ 54471235 (-) True XLOC_011116
TCONS_00021645 mRNA downstream 129639 54459135 ~ 54465271 (-) False XLOC_011116
TCONS_00021644 mRNA downstream 139337 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021643 mRNA downstream 189873 54402511 ~ 54405037 (-) True XLOC_011113
TCONS_00021648 mRNA upstream 35817 54633238 ~ 54640315 (-) True XLOC_011120
TCONS_00021651 mRNA upstream 187843 54785264 ~ 54800202 (-) False XLOC_011122
TCONS_00021652 mRNA upstream 187844 54785265 ~ 54800202 (-) False XLOC_011122
TCONS_00021655 mRNA upstream 207394 54804815 ~ 54810464 (-) True XLOC_011123
TCONS_00021656 mRNA upstream 293414 54890835 ~ 54907588 (-) False XLOC_011124
TCONS_00021635 other downstream 939371 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 944915 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2647129 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2839404 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3633548 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 168080 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 188316 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

//