RNA id: TCONS_00021649


Basic Information

Item Value
RNA id TCONS_00021649
length 296
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_011121
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54761897 ~ 54767193 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATGGAAGCAAGACGCCAGAGCCGGATTTCTGTACATTCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATcaactttttatgaCAACCGATGTCCATCTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007498 mesoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0060914 heart formation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048645 animal organ formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022304 lncRNA downstream 164476 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00022303 lncRNA downstream 229807 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022302 lncRNA downstream 229877 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00022301 lncRNA downstream 233196 54526409 ~ 54528701 (-) False XLOC_011118
TCONS_00022300 lncRNA downstream 322741 54436976 ~ 54439156 (-) True XLOC_011114
TCONS_00021654 lncRNA upstream 20180 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021851 lncRNA upstream 231793 54998986 ~ 54999993 (-) True XLOC_011128
TCONS_00021666 lncRNA upstream 424979 55192172 ~ 55197372 (-) False XLOC_011131
TCONS_00022305 lncRNA upstream 424979 55192172 ~ 55202200 (-) False XLOC_011131
TCONS_00021852 lncRNA upstream 425031 55192224 ~ 55202075 (-) False XLOC_011131
TCONS_00021648 mRNA downstream 121582 54633238 ~ 54640315 (-) True XLOC_011120
TCONS_00021647 mRNA downstream 263788 54474621 ~ 54498109 (-) True XLOC_011117
TCONS_00021646 mRNA downstream 290662 54459135 ~ 54471235 (-) True XLOC_011116
TCONS_00021645 mRNA downstream 296626 54459135 ~ 54465271 (-) False XLOC_011116
TCONS_00021644 mRNA downstream 306324 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021651 mRNA upstream 18071 54785264 ~ 54800202 (-) False XLOC_011122
TCONS_00021652 mRNA upstream 18072 54785265 ~ 54800202 (-) False XLOC_011122
TCONS_00021655 mRNA upstream 37622 54804815 ~ 54810464 (-) True XLOC_011123
TCONS_00021656 mRNA upstream 123642 54890835 ~ 54907588 (-) False XLOC_011124
TCONS_00021657 mRNA upstream 124457 54891650 ~ 54919260 (-) True XLOC_011124
TCONS_00021635 other downstream 1106358 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 1111902 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2814116 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 3006391 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3800535 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021653 other upstream 18544 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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