RNA id: TCONS_00021666


Basic Information

Item Value
RNA id TCONS_00021666
length 1430
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_011131
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 55192172 ~ 55204179 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acGTTATCCAAGCTAGACTAGTAAATAGAAGCATAAATATAAAAGCACCTCAGTTTTGTTTTCTCCTTTAAAAGTGCACTGCACTTTTGGTTTTTTTTTGGATTCAATGGTCATATATGCTAGAAACGCACAAAGCACACCTGCCGGATAAAAGAGGAATATGCAAAGTGATCACTAAATTCACTGCTTGATTACATagattacacgagctggattcactggtcagttTTTCTAACAAAACACACTGAAGACCCCTGCTGGATAAGAGGGGGTAATGCAAAAAGAACAGCATGAACTAATAATAGATAATGATCGTTTGCTGTTGTAGACCAGTATTGCTGTAgttattcaagtttatttgtatactttttttttcacaataatggTTGTTCCATAGCCGCTTTACAAAAGGGGCATGTTATATTAGAGTTATCTTGCTTGATGTGGACTGTACTCTAGGAGTGGTTAGTGATTCAGTTCtgcatttattaatgtttgaCCTTGATGATTCCTGCATGTCTGATAACTTCTGATTGGTCCGGTTGTAGTTTTTGGCTCATCCTATGAGCCCGAAAGACATGGCGTTTATTGGCTGTAATGTTCTGGGCCTCGTCTTCTCTCTCATCGTCTTCGCCACCTCCTGCTGCTGGTGTAAATCGAGGAAGCGTCTGATGGTGATCCACATGAGTTCAGTGCCTCCTGCAGTGGTCAGTGAAGATGTTGTTGATCATCCGCATCCAGTCTTTCCTCTTCCAGCCTACAGTCCAGTGCCATCCTCAGAACCGCCGGCATATGAGGATGAGCGGCGCTCGACTCTCTCTCGCTCTTCTGCTCCGCGGTGGGACAAGAGACGCTGGATTGAGGATCTGCAGAACAACAGGAGACCCTTACAAGTCTGAACACAGGCACTGTTTACACTTAATCCTGCTCTAAACTAGAGCTTCAGTCACCTTTATTTAATATGAGATCCCGTCAGAGCTCAGTTCAGAGCCTTTTCTTAGTAGAACTtctatttttttcccatttatgCGCCATCAGGACCGACAGGCTGTGCAATATGACCATACATAGGttgtatggacaaaataaaaagtgaatattatttactttatattataataCACATCGTTTACACTAATAATTTGTCTATTTATATAAGCGCAATATTACAAAAACATGAAGAGCAGCACTGAGAGAAAGCTGCAATCTTGAAAGTACAGTGTTTACATTCTGCACATTATTTAGCGATATGTTGGACGTGTAATCATTAgctaaagtgttttattttgttaatatttatttatatttctacatttttaattaaagatttggtctgaagttgtaaataaagtgagaaatatgatcacatatgaaTGAGGACGCCTCTGAGTGTTTACTTTATTATGTTAAGGAATCATCTACATGTGGTC

Function

GO:

id name namespace
GO:0034330 cell junction organization biological_process
GO:0034332 adherens junction organization biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021851 lncRNA downstream 192179 54998986 ~ 54999993 (-) True XLOC_011128
TCONS_00021654 lncRNA downstream 397598 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021649 lncRNA downstream 424979 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00022304 lncRNA downstream 594751 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00022303 lncRNA downstream 660082 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00021855 lncRNA upstream 1987 55199359 ~ 55202200 (-) True XLOC_011131
TCONS_00021665 mRNA downstream 69396 55105545 ~ 55122776 (-) True XLOC_011130
TCONS_00021663 mRNA downstream 163381 55003121 ~ 55028791 (-) False XLOC_011129
TCONS_00021664 mRNA downstream 163432 55004473 ~ 55028740 (-) True XLOC_011129
TCONS_00021662 mRNA downstream 213191 54964737 ~ 54978981 (-) True XLOC_011127
TCONS_00021661 mRNA downstream 220895 54947768 ~ 54971277 (-) False XLOC_011127
TCONS_00021667 mRNA upstream 11026 55208398 ~ 55259199 (-) True XLOC_011132
TCONS_00021653 other downstream 405189 54785737 ~ 54786983 (-) False XLOC_011122
TCONS_00021650 other downstream 424979 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021635 other downstream 1536633 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 1542177 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 3244391 51941830 ~ 51947781 (-) True XLOC_011089

Expression Profile

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