RNA id: TCONS_00024450


Basic Information

Item Value
RNA id TCONS_00024450
length 429
lncRNA type intronic
GC content 0.48
exon number 1
gene id XLOC_011177
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 2490044 ~ 2490472 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtaccatgcgaggcagtggcgacagcggagagggaaaaaaacttcacctgatgggagtgaagaaaaaaaaccttgagagaaccagactcagttgggcacgaccattttaatttctccgctggcaaaaagtcttgtgcagagcttcagtcaccgtggtGGACTGaagacatattatttaaaatgaaacaatttagATGacactctgtggcgcggcagaaatatgaagtgtcccgaatcctGGCTGGGCGCCACAGACAGCCGCAACTTGAAGCGCCactgtgtgtatcctgatagaaaccaaTGTTTAaatttctaaaatgcatggcgctgcgcgtctccgagcggcacttctggtgtgccacctgcaggcaagtttgttattttatttccaattgaGTGACACTCACATGAGGCAAAGGGCGCTCACAC

Function

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024569 lncRNA upstream 57064 2431386 ~ 2432980 (+) True XLOC_011176
TCONS_00024449 lncRNA upstream 496983 1990532 ~ 1993061 (+) True XLOC_011171
TCONS_00024448 lncRNA upstream 610329 1876577 ~ 1879715 (+) True XLOC_011170
TCONS_00024568 lncRNA upstream 1172619 1304252 ~ 1317425 (+) False XLOC_011162
TCONS_00024567 lncRNA upstream 1172619 1304252 ~ 1317425 (+) True XLOC_011162
TCONS_00022352 lncRNA downstream 61984 2552456 ~ 2555288 (+) True XLOC_011178
TCONS_00024572 lncRNA downstream 108786 2599258 ~ 2610831 (+) False XLOC_011179
TCONS_00024571 lncRNA downstream 108786 2599258 ~ 2610831 (+) False XLOC_011179
TCONS_00024570 lncRNA downstream 108786 2599258 ~ 2610831 (+) True XLOC_011179
TCONS_00024573 lncRNA downstream 205884 2696356 ~ 2698680 (+) True XLOC_011181
TCONS_00022348 mRNA upstream 225015 2162916 ~ 2265029 (+) False XLOC_011175
TCONS_00022349 mRNA upstream 225015 2214283 ~ 2265029 (+) True XLOC_011175
TCONS_00022347 mRNA upstream 339060 2130018 ~ 2150984 (+) False XLOC_011174
TCONS_00022346 mRNA upstream 339060 2130018 ~ 2150984 (+) True XLOC_011174
TCONS_00022345 mRNA upstream 393836 2063693 ~ 2096208 (+) True XLOC_011173
TCONS_00022350 mRNA downstream 59031 2549503 ~ 2555215 (+) False XLOC_011178
TCONS_00022351 mRNA downstream 61981 2552453 ~ 2555126 (+) False XLOC_011178
TCONS_00022354 mRNA downstream 237335 2727807 ~ 2765947 (+) False XLOC_011182
TCONS_00022355 mRNA downstream 243859 2734331 ~ 2765952 (+) True XLOC_011182
TCONS_00022358 mRNA downstream 633657 3124129 ~ 3166898 (+) False XLOC_011186
TCONS_00022337 other upstream 990695 1499230 ~ 1499349 (+) False XLOC_011165
TCONS_00022328 other upstream 1652981 836949 ~ 837063 (+) True XLOC_011155
TCONS_00022327 other upstream 1686338 803591 ~ 803706 (+) True XLOC_011154
TCONS_00022320 other upstream 1869367 620561 ~ 620677 (+) True XLOC_011148
TCONS_00022318 other upstream 1993319 496611 ~ 496725 (+) True XLOC_011146
TCONS_00022353 other downstream 183321 2673793 ~ 2673907 (+) True XLOC_011180
TCONS_00022356 other downstream 437602 2928074 ~ 2928192 (+) True XLOC_011184
TCONS_00022357 other downstream 595177 3085649 ~ 3085765 (+) True XLOC_011185
TCONS_00022375 other downstream 2170447 4660919 ~ 4661043 (+) True XLOC_011201
TCONS_00022376 other downstream 2379931 4870403 ~ 4870522 (+) True XLOC_011202

Expression Profile

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