RNA id: TCONS_00022414


Basic Information

Item Value
RNA id TCONS_00022414
length 505
lncRNA type retained_intron
GC content 0.49
exon number 5
gene id XLOC_011224
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6667441 ~ 6746046 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCATGATTGACCGCCAGGACCGATACAAAACACTGCGAAAGTCGCTTTCTGTAAGGTGCAAGCTGTACTTCAACAACTTCATGATCCAGCTGCACTGCTGTGGCTCTATGATGTTTGACCACAACAATGAAACGCTGTCCATTTCTGTGAAGCCGCCTGGTCAGGAGATGAACAGCGTCAGTGACATGCGCTCTCTCTCGGGCGGTGAACGCTCCTTCTCCACCGTCTGCTTTATTCTGGCACTCTGGGAAATCACAGAGTCTCCTTTCCGCTGCCTGGACGAGTTTGATGTTTACATGGACATGCACAATCGCAGCATTTCAATGAACATGCTTGTGGCACTTTCCGAGCGTCAACATCTGCGGCAGTTCATCTTCATCACCCCTCAGTCTATCAGCCAACTTCCTAAAAGCACCAACATCACAATCCACCAGCTTCAGGATCCAGAGAAAGACACTGAGGAGGAGTGAGAAGTACATTaggtacacatacacacacacacaca

Function

GO: NA

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-110303-1 Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus and site of double-strand break. Orthologous to human SMC6 (structural maintenance of chromosomes 6).

Ensembl:

ensembl_id ENSDART00000155781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024588 lncRNA upstream 65006 6627628 ~ 6639120 (+) True XLOC_011223
TCONS_00024587 lncRNA upstream 175583 6528023 ~ 6528543 (+) True XLOC_011220
TCONS_00024583 lncRNA upstream 311559 6386642 ~ 6392567 (+) False XLOC_011217
TCONS_00024589 lncRNA downstream 515803 7226730 ~ 7229012 (+) True XLOC_011230
TCONS_00024454 lncRNA downstream 735582 7446509 ~ 7446781 (+) True XLOC_011232
TCONS_00022430 lncRNA downstream 829017 7539944 ~ 7543278 (+) True XLOC_011235
TCONS_00022434 lncRNA downstream 1030689 7741616 ~ 7747160 (+) False XLOC_011239
TCONS_00024590 lncRNA downstream 1031749 7742676 ~ 7746690 (+) False XLOC_011239
TCONS_00022410 mRNA upstream 37277 6625717 ~ 6666849 (+) False XLOC_011223
TCONS_00022409 mRNA upstream 64548 6625717 ~ 6639578 (+) False XLOC_011223
TCONS_00022407 mRNA upstream 106297 6563307 ~ 6597829 (+) False XLOC_011222
TCONS_00022408 mRNA upstream 111510 6585333 ~ 6592616 (+) True XLOC_011222
TCONS_00022403 mRNA upstream 145530 6535694 ~ 6558596 (+) False XLOC_011221
TCONS_00022415 mRNA downstream 54694 6765621 ~ 6789670 (+) False XLOC_011225
TCONS_00022416 mRNA downstream 54720 6765647 ~ 6789536 (+) True XLOC_011225
TCONS_00022417 mRNA downstream 82074 6793001 ~ 6810785 (+) True XLOC_011226
TCONS_00022418 mRNA downstream 111410 6822337 ~ 6826156 (+) True XLOC_011227
TCONS_00022419 mRNA downstream 117623 6828550 ~ 6932061 (+) True XLOC_011228
TCONS_00022376 other upstream 1833604 4870403 ~ 4870522 (+) True XLOC_011202
TCONS_00022375 other upstream 2043083 4660919 ~ 4661043 (+) True XLOC_011201
TCONS_00022357 other upstream 3618361 3085649 ~ 3085765 (+) True XLOC_011185
TCONS_00022356 other upstream 3775934 2928074 ~ 2928192 (+) True XLOC_011184
TCONS_00022353 other upstream 4030219 2673793 ~ 2673907 (+) True XLOC_011180
TCONS_00022422 other downstream 609115 7320042 ~ 7320165 (+) True XLOC_011231
TCONS_00022433 other downstream 950281 7661208 ~ 7661324 (+) True XLOC_011238
TCONS_00022440 other downstream 1379430 8090357 ~ 8090474 (+) True XLOC_011242
TCONS_00022450 other downstream 1589463 8300390 ~ 8300504 (+) True XLOC_011249
TCONS_00022453 other downstream 1761174 8472101 ~ 8472217 (+) True XLOC_011252

Expression Profile

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