RNA id: TCONS_00024615


Basic Information

Item Value
RNA id TCONS_00024615
length 1147
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id XLOC_011304
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 13221832 ~ 13601942 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGGCAACAGCTAAGAAAACAATGGGATAAAAATGATGTTGAATGCTCGTTTTGATTAAACTGACTTTCTGACTAGTAAATATAGACGCGTGTACACGAAGATTAATATAATTCATAGCCGTTGTGTGCATAAGCGCACCTGTCACACCTGCTGGCGTCACGAAATGAATCTTTTTGAAATATTCGAGTGAGCGAATCAAAAGCAAGACACGCGGGAAATCAACCATACATGCTGCATTGGGCTGCAATCTCTCctaaattaaacaataatgaATAACATCCAAGGCTTAACCAAGTCTCTGGAAATGAACTTACAGTGTTATGGAGTATTTCACACGGGACGAAACAGCATCCAATGAACAATTGGTCATGGAGTTAATGGGAAATAAAACTACTGAATATTGCAGAAGTGCAGGATGTTTTACATTCAAGCAAAGACCCGCTTGACCTTTGAGTGATACAATCAGATGTACGTGATGAGAGAAAAGCAACCCAAACCGAAGgcCTGGAAGTTTTTAAACATGACCACACACAGTGCCACTAGAAAGATAAAATGACAAACCACATCCAGTTGAGGCTACGGAAAGAGCATGAAATGAGGAGGCCACATTGATTTGGATTGTTAACTGCAGAAAGCCTGACGAGGACTCATCAGAAGCCTGCTGGAGGTCCTCATCCAGACAGAAAGAGTTATGAATCAGCACACACGGTACCAAAATACAGCCAAGAATCAGATGATCTCTGGGTTGACGAGTCTGGATTCAAACCAATATTCAAAACAGTCCAaaccaatccaggctcattctgtaaatgtactctacatacatttctggagaacaccaaatacgtcccaggaggtacgttttttgggGGTACGTTTCCCaggaggccactgttgactgactgactaactgactgactgaccgatctaCTGTCCCACCCTTCatcttccctaaatccaaccaatagggTTTTCAAAGCAACCTACAGTTTCAATctataaaaagaaaagccctcgtcagATTTTTACCATGTCTGAGTGTCTTTAGTATGCACTGGGTTTCATGCAGCCGCTGCGATTGGATATTATACAAAAATCATTGATTCAGGGGGGTTATAGattgtaccaaaaagctgaggaccgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024603 lncRNA upstream 111818 13107093 ~ 13110117 (+) True XLOC_011303
TCONS_00024457 lncRNA upstream 118969 13102228 ~ 13102966 (+) False XLOC_011303
TCONS_00022543 lncRNA upstream 207679 13007288 ~ 13014256 (+) False XLOC_011300
TCONS_00022542 lncRNA upstream 275675 12943519 ~ 12946260 (+) True XLOC_011299
TCONS_00022541 lncRNA upstream 277654 12942672 ~ 12944281 (+) False XLOC_011299
TCONS_00024617 lncRNA downstream 146617 13590309 ~ 13601821 (+) False XLOC_011304
TCONS_00024459 lncRNA downstream 152769 13596461 ~ 13601942 (+) True XLOC_011304
TCONS_00022552 lncRNA downstream 369731 13813423 ~ 14000442 (+) False XLOC_011306
TCONS_00024619 lncRNA downstream 369734 13813426 ~ 14016211 (+) False XLOC_011306
TCONS_00024618 lncRNA downstream 369734 13813426 ~ 14016211 (+) False XLOC_011306
TCONS_00022547 mRNA upstream 111814 13099476 ~ 13110121 (+) False XLOC_011303
TCONS_00022546 mRNA upstream 123616 13088594 ~ 13098319 (+) True XLOC_011302
TCONS_00022545 mRNA upstream 183184 13031497 ~ 13038751 (+) True XLOC_011301
TCONS_00022544 mRNA upstream 202292 13007307 ~ 13019643 (+) True XLOC_011300
TCONS_00022540 mRNA upstream 275199 12942634 ~ 12946736 (+) False XLOC_011299
TCONS_00022550 mRNA downstream 220750 13664442 ~ 13780499 (+) False XLOC_011305
TCONS_00022551 mRNA downstream 319733 13763425 ~ 13780499 (+) True XLOC_011305
TCONS_00022553 mRNA downstream 981527 14425219 ~ 14442570 (+) True XLOC_011307
TCONS_00022554 mRNA downstream 1008637 14452329 ~ 14458667 (+) False XLOC_011308
TCONS_00022555 mRNA downstream 1268073 14711765 ~ 14712599 (+) True XLOC_011309
TCONS_00022538 other upstream 299560 12918748 ~ 12922375 (+) True XLOC_011295
TCONS_00022537 other upstream 352991 12868830 ~ 12868944 (+) True XLOC_011297
TCONS_00022534 other upstream 420356 12801464 ~ 12801579 (+) True XLOC_011296
TCONS_00022522 other upstream 558166 12658568 ~ 12663769 (+) True XLOC_011291
TCONS_00022502 other upstream 1819975 11401947 ~ 11401960 (+) True XLOC_011274
TCONS_00022579 other downstream 1989834 15433526 ~ 15435628 (+) False XLOC_011326
TCONS_00022581 other downstream 2073426 15517118 ~ 15517232 (+) True XLOC_011327
TCONS_00022584 other downstream 2092061 15535753 ~ 15537359 (+) True XLOC_011328
TCONS_00022592 other downstream 2457733 15901425 ~ 15901547 (+) True XLOC_011334
TCONS_00022601 other downstream 2646468 16090160 ~ 16107144 (+) False XLOC_011337