RNA id: TCONS_00024459


Basic Information

Item Value
RNA id TCONS_00024459
length 939
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_011304
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 13221832 ~ 13601942 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAGAAATTGAGAAATCaccctctttttttatttctaatcatTTAGTTTAATCCTGCCTCATTTCACAGTGTCATGCAACagaactctagtgtgaccacggcTTTAAAAGAAGTAGAGACAGCAGTGGAAGATGAAAATGGACCAGGCCTGGAGCttagGACAGCTGCTGTGGATCTGACTGCGATGATGAACGTGTTGTCTCTCTGGCCTGCGCTGGTGTGGATGGGAAGGTCAGTGTTGTAAGGAGGATTACTGTATGTGACAGAAACAGATGCTGCACAGAAGAGCAGCCTGTGGCCACAGATGAACACACAGCTCACAGATTtactggaaacacacacacacacacacacacacttgcacaaacAGTGGCTTCTCTTCTGTAATCATATACAATGAGTCTAGGTGCGACAGACTGCACAGTTTCTACTTTGTTTATGGTCTGTGGTTTGATTAAAGGACAAAACATCAATCTCACAGTCAGCGGTCAACACTTTTTACAAGAAAGGTTCTTTATTGAAAACCTTTAACATTTGTGGAACTTTTCATTCCCCAAATGATTCTTTATAGTGTCTTGAAGCTCCTTTAGATTATGAAATTATTTTCACTCATTTAAACAAAGAACTCTTCACTAAAAGGTTATTTGGGCTCTTTTTAACCAGGCTGGAGTCCAGAGTGCTTTTATAAAGAATATACGATGGCTGTAGCTCTAAAATCTAACCAGAAAAGcaatgttaaagtttttttttttttttttttatatttgatgtcATTTgtcaactttataaaaaacctatgTAATATTTTTGAAATGCTTTTATACTTATAATTTTCTgggattttaaaagatttttaaatattcttttatttcattaaattaaaaaaattatttgtacattgattttttctttatttattattaaacttatttatttacc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024611 lncRNA upstream 150065 13221918 ~ 13446396 (+) False XLOC_011304
TCONS_00024605 lncRNA upstream 152769 13221832 ~ 13443692 (+) False XLOC_011304
TCONS_00022552 lncRNA downstream 211481 13813423 ~ 14000442 (+) False XLOC_011306
TCONS_00024619 lncRNA downstream 211484 13813426 ~ 14016211 (+) False XLOC_011306
TCONS_00024618 lncRNA downstream 211484 13813426 ~ 14016211 (+) False XLOC_011306
TCONS_00024620 lncRNA downstream 211560 13813502 ~ 14024410 (+) False XLOC_011306
TCONS_00024621 lncRNA downstream 211560 13813502 ~ 14059995 (+) False XLOC_011306
TCONS_00022547 mRNA upstream 486340 13099476 ~ 13110121 (+) False XLOC_011303
TCONS_00022546 mRNA upstream 498142 13088594 ~ 13098319 (+) True XLOC_011302
TCONS_00022545 mRNA upstream 557710 13031497 ~ 13038751 (+) True XLOC_011301
TCONS_00022544 mRNA upstream 576818 13007307 ~ 13019643 (+) True XLOC_011300
TCONS_00022540 mRNA upstream 649725 12942634 ~ 12946736 (+) False XLOC_011299
TCONS_00022550 mRNA downstream 62500 13664442 ~ 13780499 (+) False XLOC_011305
TCONS_00022551 mRNA downstream 161483 13763425 ~ 13780499 (+) True XLOC_011305
TCONS_00022553 mRNA downstream 823277 14425219 ~ 14442570 (+) True XLOC_011307
TCONS_00022554 mRNA downstream 850387 14452329 ~ 14458667 (+) False XLOC_011308
TCONS_00022555 mRNA downstream 1109823 14711765 ~ 14712599 (+) True XLOC_011309
TCONS_00022538 other upstream 674086 12918748 ~ 12922375 (+) True XLOC_011295
TCONS_00022537 other upstream 727517 12868830 ~ 12868944 (+) True XLOC_011297
TCONS_00022534 other upstream 794882 12801464 ~ 12801579 (+) True XLOC_011296
TCONS_00022522 other upstream 932692 12658568 ~ 12663769 (+) True XLOC_011291
TCONS_00022502 other upstream 2194501 11401947 ~ 11401960 (+) True XLOC_011274
TCONS_00022579 other downstream 1831584 15433526 ~ 15435628 (+) False XLOC_011326
TCONS_00022581 other downstream 1915176 15517118 ~ 15517232 (+) True XLOC_011327
TCONS_00022584 other downstream 1933811 15535753 ~ 15537359 (+) True XLOC_011328
TCONS_00022592 other downstream 2299483 15901425 ~ 15901547 (+) True XLOC_011334
TCONS_00022601 other downstream 2488218 16090160 ~ 16107144 (+) False XLOC_011337

Expression Profile

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