RNA id: TCONS_00022579


Basic Information

Item Value
RNA id TCONS_00022579
length 565
RNA type nonsense_mediated_decay
GC content 0.47
exon number 5
gene id XLOC_011326
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 15433518 ~ 15435887 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGAACTCAGCGACTGTACGAGCAGGACCACTGTGTGTTTCATCATCTCTCAACATGGTCGATGCATTTTGTGCCACTTGGAAACTGGTTGACAGCCAGAACTTCGACGAGTACATGAAGTCACTGGGTGTTGGTTTTGCTACCAGGCAAGTAGGCAATGTTACCAAACCCACAATTGTGATCAGTCATGAGGGCGATAAAGTTGTGATAAAGACGCTGAGCACCTTTAAAAACACCGAAATTTCCTTCAAACTGGGAGAGGAGTTTGATGAAACCACAGCAGACGATAGACATGTGAAGTCTACTGTATCCTTGGAAGGAGACAATCTTGTCCAAGTTCAGAGGTGGGACGGCAAGGAGACAAAGTTTGTCAGAGAAATCAAGGATGGTAAAATGGTTATGtccctttattaatccggggtcaccacagcggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttccagccgcaacccatctctgggaacaatTCATCATATATTCATACCTTGACCTTTGAGGGAGTGCAGGCCGTGCGCACATAC

Function

GO:

id name namespace
GO:0005504 fatty acid binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000627-1 Predicted to enable fatty acid binding activity. Is expressed in several structures, including gill; immature eye; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FABP7 (fatty acid binding protein 7).

Ensembl:

ensembl_id ENSDART00000149978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022576 lncRNA upstream 30288 15396728 ~ 15403238 (+) True XLOC_011324
TCONS_00024635 lncRNA upstream 115309 15297233 ~ 15318217 (+) True XLOC_011323
TCONS_00022574 lncRNA upstream 126809 15297233 ~ 15306717 (+) False XLOC_011323
TCONS_00024634 lncRNA upstream 157381 15230045 ~ 15276145 (+) True XLOC_011322
TCONS_00024460 lncRNA upstream 248233 15185033 ~ 15185293 (+) True XLOC_011320
TCONS_00024636 lncRNA downstream 123511 15559139 ~ 15574533 (+) False XLOC_011329
TCONS_00024637 lncRNA downstream 123513 15559141 ~ 15600617 (+) False XLOC_011329
TCONS_00024638 lncRNA downstream 123513 15559141 ~ 15619243 (+) False XLOC_011329
TCONS_00024461 lncRNA downstream 160156 15595784 ~ 15596021 (+) True XLOC_011330
TCONS_00024639 lncRNA downstream 304898 15740526 ~ 15744378 (+) False XLOC_011329
TCONS_00022577 mRNA upstream 16309 15413412 ~ 15417217 (+) True XLOC_011325
TCONS_00022575 mRNA upstream 22541 15388479 ~ 15410985 (+) False XLOC_011324
TCONS_00022571 mRNA upstream 213586 15213496 ~ 15219940 (+) False XLOC_011321
TCONS_00022572 mRNA upstream 214154 15213556 ~ 15219372 (+) False XLOC_011321
TCONS_00022573 mRNA upstream 214324 15216022 ~ 15219202 (+) True XLOC_011321
TCONS_00022582 mRNA downstream 99187 15534815 ~ 15539701 (+) False XLOC_011328
TCONS_00022583 mRNA downstream 99873 15535501 ~ 15538201 (+) False XLOC_011328
TCONS_00022585 mRNA downstream 123418 15559046 ~ 15737076 (+) False XLOC_011329
TCONS_00022586 mRNA downstream 238424 15674052 ~ 15742138 (+) False XLOC_011329
TCONS_00022587 mRNA downstream 352472 15788100 ~ 15820304 (+) True XLOC_011331
TCONS_00022538 other upstream 2511151 12918748 ~ 12922375 (+) True XLOC_011295
TCONS_00022537 other upstream 2564582 12868830 ~ 12868944 (+) True XLOC_011297
TCONS_00022534 other upstream 2631947 12801464 ~ 12801579 (+) True XLOC_011296
TCONS_00022522 other upstream 2769757 12658568 ~ 12663769 (+) True XLOC_011291
TCONS_00022502 other upstream 4031566 11401947 ~ 11401960 (+) True XLOC_011274
TCONS_00022581 other downstream 81490 15517118 ~ 15517232 (+) True XLOC_011327
TCONS_00022584 other downstream 100125 15535753 ~ 15537359 (+) True XLOC_011328
TCONS_00022592 other downstream 465797 15901425 ~ 15901547 (+) True XLOC_011334
TCONS_00022601 other downstream 654532 16090160 ~ 16107144 (+) False XLOC_011337
TCONS_00022604 other downstream 654910 16090538 ~ 16099731 (+) True XLOC_011337

Expression Profile

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