RNA id: TCONS_00022622


Basic Information

Item Value
RNA id TCONS_00022622
length 445
RNA type processed_transcript
GC content 0.41
exon number 4
gene id XLOC_011350
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 17914340 ~ 18025691 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGGCGGAAACTAACACCTtcgtattgttttttttaataatattttttctttcttaaacaaCTAATTCAAATTTGATTCATTCAAGAATCTGATTGAATTGGTCATATAGCGGATCTCAAGTCAACATTTACTATTTTTGGCGGTTAGCTGTTACTGTTACAGTATGTTTGCTGATTGGATTTGAAAACAAGCACGGGGGATTTTCCTGATGGCCTTGGCAAATGGTCCTGAGTGCGTTCATGGAAATCTGGAGTGCAGTCATTTGGCTTCAAAAGTCATGTCCTCAGGACCCTcagCTCATGAGAGAGGAGCTTCTACCAACAGGAATCCTTGATTTCCTTAAAGCATCCTGCAAGAGAGCCACAAATACCTATGAGTGATCAGACTGGCCACCAGGTCTCTGTCCCTCACAAAAAGCCCAGTGTACATGCATATTTGTGCT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048863 stem cell differentiation biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060841 venous blood vessel development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017134 fibroblast growth factor binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-060825-198 Predicted to be located in adherens junction and bicellular tight junction. Predicted to be active in apical junction complex. Orthologous to human CCDC85C (coiled-coil domain containing 85C).

Ensembl:

ensembl_id ENSDART00000152045

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024644 lncRNA upstream 213020 17695835 ~ 17701349 (+) True XLOC_011346
TCONS_00024462 lncRNA upstream 849265 17064222 ~ 17065104 (+) True XLOC_011345
TCONS_00024643 lncRNA upstream 1793406 16110177 ~ 16120963 (+) False XLOC_011338
TCONS_00022605 lncRNA upstream 1793406 16110177 ~ 16120963 (+) True XLOC_011338
TCONS_00024642 lncRNA upstream 1802872 16110171 ~ 16111497 (+) False XLOC_011338
TCONS_00022632 lncRNA downstream 316606 18237206 ~ 18276410 (+) False XLOC_011353
TCONS_00024646 lncRNA downstream 316606 18237206 ~ 18304512 (+) False XLOC_011353
TCONS_00024647 lncRNA downstream 316606 18237206 ~ 18421144 (+) False XLOC_011353
TCONS_00024648 lncRNA downstream 316610 18237210 ~ 18421144 (+) False XLOC_011353
TCONS_00024649 lncRNA downstream 316610 18237210 ~ 18548834 (+) False XLOC_011353
TCONS_00022621 mRNA upstream 11860 17861681 ~ 17902509 (+) True XLOC_011349
TCONS_00022618 mRNA upstream 58251 17804752 ~ 17856118 (+) False XLOC_011348
TCONS_00022616 mRNA upstream 139177 17764979 ~ 17775192 (+) True XLOC_011347
TCONS_00022614 mRNA upstream 1037617 16873417 ~ 16876752 (+) True XLOC_011344
TCONS_00022613 mRNA upstream 1105956 16767015 ~ 16808413 (+) True XLOC_011343
TCONS_00022624 mRNA downstream 34463 17955063 ~ 18025691 (+) True XLOC_011350
TCONS_00022625 mRNA downstream 110704 18031304 ~ 18069138 (+) False XLOC_011351
TCONS_00022626 mRNA downstream 111299 18031899 ~ 18070787 (+) True XLOC_011351
TCONS_00022628 mRNA downstream 196429 18117029 ~ 18180747 (+) False XLOC_011352
TCONS_00022627 mRNA downstream 196429 18117029 ~ 18180747 (+) False XLOC_011352
TCONS_00022617 other upstream 58255 17804727 ~ 17856114 (+) False XLOC_011348
TCONS_00022620 other upstream 58323 17839714 ~ 17856046 (+) True XLOC_011348
TCONS_00022619 other upstream 90768 17811487 ~ 17823601 (+) False XLOC_011348
TCONS_00022615 other upstream 139404 17764979 ~ 17774965 (+) False XLOC_011347
TCONS_00022609 other upstream 1376049 16538205 ~ 16538320 (+) True XLOC_011341
TCONS_00022631 other downstream 255088 18175688 ~ 18178147 (+) True XLOC_011352
TCONS_00022634 other downstream 878395 18798995 ~ 18799131 (+) True XLOC_011356
TCONS_00022650 other downstream 2255046 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022660 other downstream 2664728 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022664 other downstream 2695416 20616016 ~ 20626819 (+) False XLOC_011374

Expression Profile

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