RNA id: TCONS_00024646


Basic Information

Item Value
RNA id TCONS_00024646
length 1128
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id XLOC_011353
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 18237206 ~ 18548834 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGATTCTGATTCAGTTCACTATTAAGCGACTCACTTCCGATACAATCTAGGCCTGAAGTTCACGGTCAACTAGTTTACAGTTCTAACTTGCACAAAATTAAGAAAAGGAGGCACAGTCCACTCACTGTATGTTGCACCATATTATATTATCCGCATGGGAAAGTTGTTTATCTCTTAATGACATCGCTGATCTAGTTGTCACGCCAATCCAAACGACGGCGGCGGCAAGCATCATCAAAACGAAATAATGTCTAGAACGCTGCTAGACATCTGACCTGTGAACTCGGGGCAGATGGAAGGACCCTGGACCTCAGCAAGATGCGTCATTTGACATCACTTCACAGATGACGGCTAGTTCTGTCTCAGTTAGTTTACAGGGGCCTATTGCCTGGGGCATAATACCTCTGAAATTACTGCATAGCTGTCTTCTCTGTAACCACAGAATGGAGAAATGTGGGAGGCTGGGCAACAAGACGTGCATTGTAACCCCTTCAATAGCTCAGCACCTCCTGTGTCACAGCCTACAAAAAAGGACagcggtctgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtggaaAAAGGCCCAAGGTTTACCTGGTCTGCGGCTCTAGACACCACGGCAGCCAAGAAGCATCAGGAGGCAGCGGAGCATGACAGGCCCCACATCAAAGCACAACACCACACCTTGATCCAGACCCCCCACCCCACGGCCCGCGCCTCCTCCCGTCAGGACACACCTGACAGAGGGGCCACCCCGCGCCTTCAAAGACACACGGAGAGACACGAGACACAAATAAACGTCTAGACACTTTCTCTTACGGTGACCTAATGGTGTGGAATTTTTGCTCTCTTTGCACCTTATCTCTGTCGAGAGGGGAGAAACAACGTGATTGATTTGGGAAGTGTCAGAAGACTCCAGGATTCCCCCCTCCCGCCCCTTAGAGAAGAACAATTGAATTGCTAATGCGCTAGAGGGGTAAAATCTCAGTGTGTGGGTAATTTAAGGAAGAAACTTGGGTGCAAATCTACATAGACCAATATCTGTTTTAGTCTAAAGAAATATGcatcaaaaatgattaaaaataggaGAGTAGTAGTATgattatcatatattatatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024645 lncRNA upstream 313019 17914340 ~ 17924187 (+) False XLOC_011350
TCONS_00024644 lncRNA upstream 535857 17695835 ~ 17701349 (+) True XLOC_011346
TCONS_00024462 lncRNA upstream 1172102 17064222 ~ 17065104 (+) True XLOC_011345
TCONS_00024643 lncRNA upstream 2116243 16110177 ~ 16120963 (+) False XLOC_011338
TCONS_00024655 lncRNA downstream 321081 18625593 ~ 18685357 (+) False XLOC_011354
TCONS_00024657 lncRNA downstream 352872 18657384 ~ 18663228 (+) False XLOC_011354
TCONS_00024656 lncRNA downstream 352872 18657384 ~ 18663228 (+) False XLOC_011354
TCONS_00024661 lncRNA downstream 352872 18657384 ~ 18685357 (+) False XLOC_011354
TCONS_00024660 lncRNA downstream 352872 18657384 ~ 18685357 (+) False XLOC_011354
TCONS_00022628 mRNA upstream 56459 18117029 ~ 18180747 (+) False XLOC_011352
TCONS_00022627 mRNA upstream 56459 18117029 ~ 18180747 (+) False XLOC_011352
TCONS_00022629 mRNA upstream 60910 18117358 ~ 18176296 (+) False XLOC_011352
TCONS_00022630 mRNA upstream 101475 18117976 ~ 18135731 (+) False XLOC_011352
TCONS_00022626 mRNA upstream 166419 18031899 ~ 18070787 (+) True XLOC_011351
TCONS_00022635 mRNA downstream 506392 18810904 ~ 18872150 (+) True XLOC_011357
TCONS_00022637 mRNA downstream 1176537 19481049 ~ 19497006 (+) False XLOC_011362
TCONS_00022639 mRNA downstream 1194645 19499157 ~ 19511206 (+) False XLOC_011363
TCONS_00022642 mRNA downstream 1321967 19626479 ~ 19726854 (+) False XLOC_011366
TCONS_00022643 mRNA downstream 1321967 19626479 ~ 19727112 (+) False XLOC_011366
TCONS_00022631 other upstream 59059 18175688 ~ 18178147 (+) True XLOC_011352
TCONS_00022623 other upstream 212006 17914479 ~ 18025200 (+) False XLOC_011350
TCONS_00022622 other upstream 316606 17914369 ~ 17920600 (+) False XLOC_011350
TCONS_00022620 other upstream 381160 17839714 ~ 17856046 (+) True XLOC_011348
TCONS_00022619 other upstream 413605 17811487 ~ 17823601 (+) False XLOC_011348
TCONS_00022634 other downstream 494483 18798995 ~ 18799131 (+) True XLOC_011356
TCONS_00022650 other downstream 1871134 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022660 other downstream 2280816 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022664 other downstream 2311504 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other downstream 2311687 20616199 ~ 20620945 (+) False XLOC_011374

Expression Profile

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