RNA id: TCONS_00024656


Basic Information

Item Value
RNA id TCONS_00024656
length 2254
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_011354
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 18625593 ~ 18685357 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAACCGCAGAAATAACAAAGACGGAGTCCAAAGATCCATGACGATGAAATCGATGAGCTCTGCACCTCTTCGTTCTCACATCCCCGAAACGCTCCACCAAAAATCTCTGCGTCCTCCTACTCCACAAGAGAGAAGTGAAAGATTACTGCCGAAAGTCTCGGTGGAGTCACAGCCCTGGGTGCACGGCGGCGACGAGATAAACGCGGAAAATCAACTGGAAGAAAACAGGGAAgcgagagaagaagaagaaggaaaaaaacgCACATGCACGGCTGGCCGACGTTGGCCAAAAACTCAAAGGAGAGATGGTTACACTGCATCGCCAGCTTGCCTCATCTGAATCCCTGACTCCTGACCTCCCCTGAGGAAGGTGCTCACTGTCAGAAGAAGCCCCGGCATCCAGCGCAGCGCAGAAAGGTGATTCCTTTAAAGCGGATGGAGGAGCGAGAGGAGGGGAGCTGTCGCTTGTGTCAGGTTAACCTCCGAGAAACATCCGGAGCTCAGCATCTGGGAGACGGAGGGGAGAGAAGAGCTCCATTTGCGGGCGCAAGTGAGTTTTTGCATTAAGCATCCTGCCATGGCTTTCATcagcatttcttttatttatctaTCCTTCTTCCTTTCTCACCTCccctgaaataaaaaaacaaccccCTCCACctcccaaaaaagaaaaaaaaaaaacaagggtaAAACGCCAAACTTTGTGCACTGTCAGTCCCACGGGCTGTGCTTATTCCCGGATTTATGTTAGCAACGGTGTGGTGGTgttaaagagagaaagagagagagctttgcaTGCAGAAAGGAAGGAGATGATACTGATGTTTTTGCAGCACATGTGTTAAGTCACTCACACGCCACTGTAACACCTGAAATTGCGGCAGCTGCTGCTGTTAAACATGCTTCTCTTGTTCCAGTTTCAACACCGCAGCAACAGATAGCAAGTCCTGTAGAGGTCTTTAAGGTAACACATTATGATGTCtgcaactttttttgtttttttactattgtGTATTTATGGTTGAATTCATTTGAGAAAGTGTCTTGTGATGTGTAAGAGAAAAATAAAAGGCAGTCACTGTAATTACTTGTTGACTGTGTGGACgtacgcttaaaaaaaaaaagtacagtatTTAATAGTGGatttattttctaatgttttttactCTTGATCACACAAATCGCAAGGAAATGCTACCAATCTCCTACGTTTAGGAAAAAAAAGGGTAAAtgattacataaaaaaagaagaagaaaataacagATGGGCCTGcctaaaaaaatatgattttctacaaatgattGCATTCTCTCCCCTTTGGTGTGAAAAGTAGACTCAAGaacacttttaaataatttgttcaatTTGTTCCACAGCCAAAGAAAAGCGGCTTGGTGGAAATTCAGATTCATTAAAACTTAATTAATATGCATCATTATGTAAATGAGGTTGCAGTTAATGAGTTCTTAAAAGAAGCCTTCCTTAATTAGTTCACTTTTTAATGGCATCATCATTTATCTTTTTTCTTTGAAGCAGAATGACGCGAGGACCTCGCCGTTCCCGAAAGTGCTCGAAaaattttccattttttaattattcttattTCCTTAATTTTTATATGATTAAGAATGCATTTAGGGaagtaaataaatgagaaaaacttagaccttttttctctctctctcccctcccAGACTCGCTTATTTCCATTAAAACAGAGTCTCTGTAGATGCCGGAGTGTTTAAAAAGTTAAAGGGAACGCATCTTCTTACAAAACAATCAAGGCTGTCTCACGATTACCTCCTTGGCTTGTGTCGAGTAGCTTCGTTTCTACTAAATCTGAGCAGCGTCTTAATTGCTCTCTCCAGTTGGGCTGCAGTATATATTACCACACTCCATTACTGTTTATGGAGCCTGAGATTCATATTGCAAATATGAAGATGGCTGTGGTCATTTCCTTCTGTATTCATTCTctcgttcattcatttacatattcaatcacttgaattattttttatttttggtaaacATATTACGGGGAAAATGAGTAAGCGATCTAGTTTTAGTTCAGCACACTCGCAAAACTAAATGAGCCGGGCACCTAACTTAGAAAATCatgttttattatgtatatattttttttcagctgtCATATTTGTAAATTTGTGACCCTGGAATGAAAGAAGAATCAGTctttacaattataaaataaaatcttgcaTCACATATAATGCAAACATGAGTAGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024649 lncRNA upstream 108550 18237210 ~ 18548834 (+) False XLOC_011353
TCONS_00024651 lncRNA upstream 108550 18237215 ~ 18548834 (+) False XLOC_011353
TCONS_00024652 lncRNA upstream 108550 18237221 ~ 18548834 (+) False XLOC_011353
TCONS_00024653 lncRNA upstream 121406 18237230 ~ 18535978 (+) False XLOC_011353
TCONS_00024648 lncRNA upstream 236240 18237210 ~ 18421144 (+) False XLOC_011353
TCONS_00024464 lncRNA downstream 134779 18798007 ~ 18800546 (+) True XLOC_011355
TCONS_00024662 lncRNA downstream 235467 18898695 ~ 19139364 (+) False XLOC_011358
TCONS_00024663 lncRNA downstream 235467 18898695 ~ 19269379 (+) False XLOC_011358
TCONS_00024664 lncRNA downstream 247543 18910771 ~ 19078854 (+) False XLOC_011358
TCONS_00024665 lncRNA downstream 247543 18910771 ~ 19139364 (+) False XLOC_011358
TCONS_00022628 mRNA upstream 476637 18117029 ~ 18180747 (+) False XLOC_011352
TCONS_00022627 mRNA upstream 476637 18117029 ~ 18180747 (+) False XLOC_011352
TCONS_00022629 mRNA upstream 481088 18117358 ~ 18176296 (+) False XLOC_011352
TCONS_00022630 mRNA upstream 521653 18117976 ~ 18135731 (+) False XLOC_011352
TCONS_00022626 mRNA upstream 586597 18031899 ~ 18070787 (+) True XLOC_011351
TCONS_00022635 mRNA downstream 147676 18810904 ~ 18872150 (+) True XLOC_011357
TCONS_00022637 mRNA downstream 817821 19481049 ~ 19497006 (+) False XLOC_011362
TCONS_00022639 mRNA downstream 835929 19499157 ~ 19511206 (+) False XLOC_011363
TCONS_00022642 mRNA downstream 963251 19626479 ~ 19726854 (+) False XLOC_011366
TCONS_00022643 mRNA downstream 963251 19626479 ~ 19727112 (+) False XLOC_011366
TCONS_00022631 other upstream 479237 18175688 ~ 18178147 (+) True XLOC_011352
TCONS_00022623 other upstream 632184 17914479 ~ 18025200 (+) False XLOC_011350
TCONS_00022622 other upstream 736784 17914369 ~ 17920600 (+) False XLOC_011350
TCONS_00022620 other upstream 801338 17839714 ~ 17856046 (+) True XLOC_011348
TCONS_00022619 other upstream 833783 17811487 ~ 17823601 (+) False XLOC_011348
TCONS_00022634 other downstream 135767 18798995 ~ 18799131 (+) True XLOC_011356
TCONS_00022650 other downstream 1512418 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022660 other downstream 1922100 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022664 other downstream 1952788 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other downstream 1952971 20616199 ~ 20620945 (+) False XLOC_011374

Expression Profile

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