RNA id: TCONS_00024671


Basic Information

Item Value
RNA id TCONS_00024671
length 3014
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_011365
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 19606920 ~ 19614265 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAACAATTAATGAGTAATTTTCTGCTAGATTTGAATATGTAAATAGAGTTTTTAAATCATCATAAATCATCAAATGATTTTAGTTCTGAATAACATAAACATTAACATAAGATTTTAGTGAGATCTTTTGAGTGAGTCTTCTGTTGATCATGGTTAAAAAAGAACCACACAGGATACATTGTAATGTCTGAAAAAGCTGTGCTACCAGTGTCATTTTGATTCTTTAACTCTTAAAACCTATTTGGATTTGTTATGGctagacattttaaaatgaatgcctTTAGAGATTTTTAGCTACAAGTGTTCCTTAAAAACATTTGACATGGGGGAAAAGCAGAACATGACTGCCTCTAGCGGTCACTGGAGAAACTGTAAAACAGACGAGTAGATAGCTGAGACCATTTTTCCTTTTATATATCAGGCACTAATCCAGgagttaacaaaaaataaatcagattaGTTTGCATattgtatttagtattttattattgtcttgTCTCAAACAGACAAACTGATGTTTCATgctcataaaaacaaaacatttttattaatcaaGGAAGTTTCTCTAGTGATAGCCACATTTCTGTCTTTCCCTGATTTTTTCCTGTCACCAATGTCAAAGGAAATAGCCTTATTTGATGACTTTAGGTCTAGGGTTACAAACACACTCAATACAGCTGTTGTTGTCACAAATCTGTACACACATCCAGAATCAACAGGTTTTCTCCATCACAAACAACATTCTAAAACATGTTAACACCCAATTCTCCCCCCTGAAACTCAAACATGGTCAAAAAAGAAGAAATCATTGCCACTGTTTACACATGTACAAACACCAATGTTTTTAACTCACTTTGTCAACTAGCATCAGACACACTCTCCTCTCATGGTTTGCAATGATAAAGCTGGAGTGTTTTGGTCAAATGTTACAGCAATTAGTGCATTTAGCTATTGAAATGAGAGAAACAGTAGCATGAAATGCAGAAACAAACATGATTAAAATGAACATTCAACACATTAAACTGGATTCCTCAAAATGTTTTAACAAAACACAATCCTAACTTAAGAAATGTATTTGGAAAGAGCTTCTAAAATACTGTTGAGacctaaacacacaaacaatcGAGATTACAACGATAGAAATCcattacatatttaaaagttaaatagtcgatagttcacctgaaaatgcAGGATAAAATGCTAATCCTCATGTTGTTTTTAACCTGTATGATAcacttgaaatttttttttaaaaaaggatacATTTTGAATAAtatcctgtttaattttttccaagAAATGATGAATAATCACAGAAAATCTTCCCTACAATGTAGACATGAAATGAACTCTTGTTAACATGCACAATTTTGTTGTTCATTTGGAAATTGTatgaaatgttatatttaatttcaaatgAAATTGATATGGAACATGTTAAGAAAACACATCAGGTTGTTCTCATGTGACCCTGCACTACTAAACCTGTACATATGTTGGGCAAGGGTGTAATTGTGGGAAAAGCCAAAGATTTAAAATtaccacattttattttatgccaaaaataatttgcatattaagtaaagatttttttttttatgaagacatttttaacatttcctctcataaatatatcaaaatgtaCTTCTTAGTTAGTAATATCCTAGCAAGCACACAATGTCagaagacgttaatattaggttagatttaagttgtGATGCCAGGTGATCATAATTCAATGTCTAgctagcatctaaggacaatgctgttttgacgtccaataacaacatcaaatgacgttggttttaagttgtgttagaaagtgactaaaACTCAATGTCGATTCACCACCTTAAACTAGGGGTGCTCGGACTCAcacagtgtcctgcatattttagttgcGACTCCAATAAAACATATCTGACGTAGCTagtcaagctctttctaggtatacaaaaacttccaggcaggtgtgttaaaggaagctaaactttgcaggacaccggccctccaggattgaatttgggcacccctgaatTCACCACCTAAAATTCAACCTCTGATATATGTCATGGTGACATCCACACAacgccaagctgtaacatcattagacgttatttggttgattttaggtcggACATTGACATGGCCCTGACGCTGGGTtttgacatcaacctgattttcatttccagacAAAATGTAACGTTCCCATTACGtcagggtacaacgtcaatctgatgtcatgttgacatctgaTCCCTGCTGGGATGCATAGAAACGAACTCattctaaacaactttaaaaGCGATTTACTGTTTGGGTTCTtctgaaccctcagattccagatattgtccaatcaaaatatttattttgctaatgCACATAGTGATTTTACAGCATTCCGAAGTTAattcactgaaaataaaaaatgcttgtttTGATAACCTTCCATCAAAGTCTGACCATCCTTAGTTTAAATTGCGTAGTCAATTGGGACACTTTTATAATCCATTTATTGGGCTTTATTTGTGATTTTTTATTgactaaaatacacaaataaagcaCAATAATTCACTTAAATTACATGGAAAAGAGCATACAGGATATTCTTCAAAATTACGCCTTTTAAATTCCATCAAAGAAATCTGTACTTGTTTTGAATGACATGAGGATGAAGAAAGCAGAATGAATTCTGGGTGAACTATGGAAATGTAAACATTAACAAGCTGAAACACCTATGCTTATACAAATACCTGCTATAACATGCATACTCATTTTTTTTCCAGGCTCATTTCATTACTGTGAAAACAAGCTGCGAGCCGCACACCGGAGACACCTTTGACCTTGACACCTGCCCCTGTAGAAGGAGAGCAAGGACACCTGGGATATCTGTGCTACAGGATGTGCCCACACGCTCGTAGTAAAAAGAGATGTCTATACAGAAGCAGGTTTCAGCTTCAGAGAGCCATAGCGAGGCTTGAAAAAAAAGGACATCATTACACACAGTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024670 lncRNA upstream 75101 19513571 ~ 19531819 (+) True XLOC_011364
TCONS_00024669 lncRNA upstream 79413 19513571 ~ 19527507 (+) False XLOC_011364
TCONS_00022641 lncRNA upstream 79464 19513571 ~ 19527456 (+) False XLOC_011364
TCONS_00022640 lncRNA upstream 99580 19503856 ~ 19507340 (+) True XLOC_011363
TCONS_00022638 lncRNA upstream 110034 19495406 ~ 19496886 (+) True XLOC_011362
TCONS_00022647 lncRNA downstream 563509 20173818 ~ 20186011 (+) False XLOC_011367
TCONS_00024674 lncRNA downstream 641152 20251461 ~ 20265712 (+) False XLOC_011370
TCONS_00024675 lncRNA downstream 641152 20251461 ~ 20372739 (+) False XLOC_011370
TCONS_00024676 lncRNA downstream 641152 20251461 ~ 20437298 (+) False XLOC_011370
TCONS_00022655 lncRNA downstream 641182 20251491 ~ 20396802 (+) True XLOC_011370
TCONS_00022639 mRNA upstream 95714 19499157 ~ 19511206 (+) False XLOC_011363
TCONS_00022637 mRNA upstream 109914 19481049 ~ 19497006 (+) False XLOC_011362
TCONS_00022635 mRNA upstream 734770 18810904 ~ 18872150 (+) True XLOC_011357
TCONS_00022629 mRNA upstream 1430624 18117358 ~ 18176296 (+) False XLOC_011352
TCONS_00022642 mRNA downstream 16170 19626479 ~ 19726854 (+) False XLOC_011366
TCONS_00022643 mRNA downstream 16170 19626479 ~ 19727112 (+) False XLOC_011366
TCONS_00022644 mRNA downstream 19759 19630068 ~ 19731406 (+) False XLOC_011366
TCONS_00022645 mRNA downstream 19963 19630272 ~ 19727112 (+) False XLOC_011366
TCONS_00022646 mRNA downstream 119692 19730001 ~ 19749179 (+) True XLOC_011366
TCONS_00022634 other upstream 807789 18798995 ~ 18799131 (+) True XLOC_011356
TCONS_00022631 other upstream 1428773 18175688 ~ 18178147 (+) True XLOC_011352
TCONS_00022623 other upstream 1581720 17914479 ~ 18025200 (+) False XLOC_011350
TCONS_00022622 other upstream 1686320 17914369 ~ 17920600 (+) False XLOC_011350
TCONS_00022620 other upstream 1750874 17839714 ~ 17856046 (+) True XLOC_011348
TCONS_00022650 other downstream 565337 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022660 other downstream 975019 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022664 other downstream 1005707 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other downstream 1005890 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022668 other downstream 1015464 20625773 ~ 20630315 (+) True XLOC_011374

Expression Profile

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