RNA id: TCONS_00022649


Basic Information

Item Value
RNA id TCONS_00022649
length 1668
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_011367
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20173818 ~ 20189395 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGGTTGACTAAACTATAcactattatattattttgagcttaattatgttttatatagTTTTGTATCATTTGATATTACATTCTGtgtcaaatatatacatttgtttactgtatgtgaaccaaaataactttttattttaattagacaAATTtctattttatcatttataatatttaatatttgttcaaTTGAATATTTCATAATATCTACTTTTTTCCTACAAAAAACATGCTTGACTTTGGTTTAGGCTACTTTGTATTTTGCACTAAGTacatctgagtgatctgttaaaTATTACAGGAGAAAACATGACATATGGCAGCGCTTTTTGTGTTAATGGCGGCTTGAAGATTACACCGAGCAATAATAATGGTCAGTAATTTTCATGGCACTCCACATATGCTGCTCTTTACTtatttataaatgtcttttataaTGAACACTTTTGTTCCTAATCCTAAACCTTTAGTCTTTTTTCATTCTTATTTATCTGTGACTTGTATTTGTGTTCAGGTCATTTTACATTCATCCCCCAGCCCCTAATGTTGTAAAGGGGTTAAAAATCTAAAACCTCACTGGTCCACAGGTGTGTGGACCACCAGTATGGACCCCTGGCAAAATCTAGTGTCCAGATGGTGAGAAACATTACTAATAAGCACAAAACTCAGTTGAATTGTGATTGTAAGTTGTTTACATCTTGCAAATCTCAACCATTAATGCTTGTGCCATTATACTACTTTATTTAAtaatcactgtgtgtgtgttttttagtaCGGCATGGTGGCAGATGCACACGCCGCATGCTCTGAGAGCTTGTGTGTATGAAGTGTGTAAACCACTGGTGCCGCTCCTGCTGTGCATCACGGCCCTGGTGGCTGTGATTGTGTATGCGCTGGCCGATAATCTACACAGCTTTGTAAGCAGGATCTTCATTCCCCAGTATCACTATCCTTTTGCGGTGCCAATTGCATTCATACAGGTATTTCTAAATCTGCTGGCACTGCTAGCTTTGCACGGTGTGGGTCTGATCCACCTCAAGCCTTTCTCCCTGAGGCTGGCAGAGCGTTTGTTTGTGCCAGCGGTCTGCGGGAGCGTTCAGTGTGTTTTGGCTGTATGGGCTGAAGCCTGTACTCACTCTGGCCTGTTCCCGCTGATTGCCCGGTTCCTCCCGATGGTCAGCGTGAGCTTGGGTCACCTGTTTGCTCTGAGTATTCCAGGCTCCATCCCTGTGTCCTGCTTTCTCACTGTGCTCACTGTCTCCTCCGTCAGCGTCACAGTGTATAAAGGACTGTATGCGATGGAGCCGCTGGAGTTTGTGTATTCTCCGCTCAGCCTGATCCTCCACAGCATCTCTCTGGCCTGGTTAGCTAAAGTGGCCCAAACGGAGCGAAGCAACGCCTCAACCTTTGACCTCTACTACACTCTAACAGTGACCCGAACCCTCTTATTAGGGTTCCTATGTGTTCTGCACCCCGATGGCCCGAAGGCACTGAGTCAGGGCAACTGGCACAGTCTGCTGTTTTGGGGATACATGCTTGGGATGTTGCTGCTTGGTGCCGTGCAGCTTCTTTTTGTGGATGTAACGGCGCTGTATTTTTCTGCTCTCCCTGCAGCTGTTCTGCATGCGACCCGGGGCCTGGTTCTGCCCTTGTTCAGCCTGCTATAG

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0016020 membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131126-33 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000186628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024673 lncRNA upstream 560547 19606920 ~ 19614265 (+) True XLOC_011365
TCONS_00024672 lncRNA upstream 561687 19606920 ~ 19613125 (+) False XLOC_011365
TCONS_00024671 lncRNA upstream 564503 19606920 ~ 19610309 (+) False XLOC_011365
TCONS_00024670 lncRNA upstream 642993 19513571 ~ 19531819 (+) True XLOC_011364
TCONS_00024669 lncRNA upstream 647305 19513571 ~ 19527507 (+) False XLOC_011364
TCONS_00024674 lncRNA downstream 67485 20251461 ~ 20265712 (+) False XLOC_011370
TCONS_00024675 lncRNA downstream 67485 20251461 ~ 20372739 (+) False XLOC_011370
TCONS_00024676 lncRNA downstream 67485 20251461 ~ 20437298 (+) False XLOC_011370
TCONS_00022655 lncRNA downstream 67515 20251491 ~ 20396802 (+) True XLOC_011370
TCONS_00024677 lncRNA downstream 534000 20717976 ~ 20725895 (+) True XLOC_011376
TCONS_00022646 mRNA upstream 425633 19730001 ~ 19749179 (+) True XLOC_011366
TCONS_00022644 mRNA upstream 443406 19630068 ~ 19731406 (+) False XLOC_011366
TCONS_00022643 mRNA upstream 447700 19626479 ~ 19727112 (+) False XLOC_011366
TCONS_00022645 mRNA upstream 447700 19630272 ~ 19727112 (+) False XLOC_011366
TCONS_00022642 mRNA upstream 447958 19626479 ~ 19726854 (+) False XLOC_011366
TCONS_00022651 mRNA downstream 20146 20204122 ~ 20207302 (+) False XLOC_011368
TCONS_00022652 mRNA downstream 21209 20205185 ~ 20207376 (+) True XLOC_011368
TCONS_00022653 mRNA downstream 53751 20237727 ~ 20243962 (+) False XLOC_011369
TCONS_00022654 mRNA downstream 53972 20237948 ~ 20243955 (+) True XLOC_011369
TCONS_00022656 mRNA downstream 316253 20500229 ~ 20518626 (+) False XLOC_011371
TCONS_00022634 other upstream 1375681 18798995 ~ 18799131 (+) True XLOC_011356
TCONS_00022631 other upstream 1996665 18175688 ~ 18178147 (+) True XLOC_011352
TCONS_00022623 other upstream 2149612 17914479 ~ 18025200 (+) False XLOC_011350
TCONS_00022622 other upstream 2254212 17914369 ~ 17920600 (+) False XLOC_011350
TCONS_00022620 other upstream 2318766 17839714 ~ 17856046 (+) True XLOC_011348
TCONS_00022660 other downstream 401352 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022664 other downstream 432040 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other downstream 432223 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022668 other downstream 441797 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022679 other downstream 1380631 21564607 ~ 21607709 (+) True XLOC_011388

Expression Profile

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