RNA id: TCONS_00022651


Basic Information

Item Value
RNA id TCONS_00022651
length 444
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_011368
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20204122 ~ 20207376 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTTGAACAAACACAGCAGTTTTAGCATGGAGTGGAAAGGAAGGTTGCTGGTCCAGTTGTTGCTGTTAGTTTGTGTGTTGGAGGTCAGTCTTTGCCAGCACTGGTCATACGGTTGGCTTCCCGGTGGAAAAAGAAGCGTTGGTGAAATGGAGGCAACATTCAGGATGTTGGATCCTGGTGACACAGTGCTGTCTATTCCTGCTGATTCTCCAATGGAGCAGCTTTCACCAATACACATAGTGAATGAGGTGGATGCTGAAGGTTTGCCTCTGAAAGGACAAAGATTTCCAGACAGACGGGGAAGagtgtaaaaatataaatgatgaagCTGATATGAGTATGAATTTTATTCCATAGgagagcatgtttttggactcCTAATGAAATATCCTCCAAATTATGGATTTAATAAATACACTTCACTGAAGGAACAGATGGGCTGT

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0043010 camera-type eye development biological_process
GO:0007275 multicellular organism development biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0031530 gonadotropin-releasing hormone receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0005183 gonadotropin hormone-releasing hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030724-4 Predicted to enable gonadotropin hormone-releasing hormone activity and gonadotropin-releasing hormone receptor binding activity. Acts upstream of or within brain development and camera-type eye development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; gonad; male organism; nervous system; and olfactory region. Human ortholog(s) of this gene implicated in breast cancer; hypogonadotropic hypogonadism 12 with or without anosmia; and periodontitis. Orthologous to human GNRH1 (gonadotropin releasing hormone 1).

Ensembl:

ensembl_id ENSDART00000078672

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022647 lncRNA upstream 18111 20173818 ~ 20186011 (+) False XLOC_011367
TCONS_00024673 lncRNA upstream 589857 19606920 ~ 19614265 (+) True XLOC_011365
TCONS_00024672 lncRNA upstream 590997 19606920 ~ 19613125 (+) False XLOC_011365
TCONS_00024671 lncRNA upstream 593813 19606920 ~ 19610309 (+) False XLOC_011365
TCONS_00024670 lncRNA upstream 672303 19513571 ~ 19531819 (+) True XLOC_011364
TCONS_00024674 lncRNA downstream 44159 20251461 ~ 20265712 (+) False XLOC_011370
TCONS_00024675 lncRNA downstream 44159 20251461 ~ 20372739 (+) False XLOC_011370
TCONS_00024676 lncRNA downstream 44159 20251461 ~ 20437298 (+) False XLOC_011370
TCONS_00022655 lncRNA downstream 44189 20251491 ~ 20396802 (+) True XLOC_011370
TCONS_00024677 lncRNA downstream 510674 20717976 ~ 20725895 (+) True XLOC_011376
TCONS_00022649 mRNA upstream 20146 20174812 ~ 20183976 (+) False XLOC_011367
TCONS_00022648 mRNA upstream 25063 20174044 ~ 20179059 (+) False XLOC_011367
TCONS_00022646 mRNA upstream 454943 19730001 ~ 19749179 (+) True XLOC_011366
TCONS_00022644 mRNA upstream 472716 19630068 ~ 19731406 (+) False XLOC_011366
TCONS_00022643 mRNA upstream 477010 19626479 ~ 19727112 (+) False XLOC_011366
TCONS_00022653 mRNA downstream 30425 20237727 ~ 20243962 (+) False XLOC_011369
TCONS_00022654 mRNA downstream 30646 20237948 ~ 20243955 (+) True XLOC_011369
TCONS_00022656 mRNA downstream 292927 20500229 ~ 20518626 (+) False XLOC_011371
TCONS_00022657 mRNA downstream 296894 20504196 ~ 20517846 (+) True XLOC_011371
TCONS_00022658 mRNA downstream 362504 20569806 ~ 20588607 (+) False XLOC_011372
TCONS_00022650 other upstream 14727 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022634 other upstream 1404991 18798995 ~ 18799131 (+) True XLOC_011356
TCONS_00022631 other upstream 2025975 18175688 ~ 18178147 (+) True XLOC_011352
TCONS_00022623 other upstream 2178922 17914479 ~ 18025200 (+) False XLOC_011350
TCONS_00022622 other upstream 2283522 17914369 ~ 17920600 (+) False XLOC_011350
TCONS_00022660 other downstream 378026 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022664 other downstream 408714 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other downstream 408897 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022668 other downstream 418471 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022679 other downstream 1357305 21564607 ~ 21607709 (+) True XLOC_011388

Expression Profile

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