RNA id: TCONS_00024675



Basic Information


Item Value
RNA id TCONS_00024675
length 1265
lncRNA type read_through
GC content 0.44
exon number 4
gene id XLOC_011370
representative False

Chromosome Information


Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20251461 ~ 20437298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GCTTGTCGTGTGATCGCAGCATGAAGTCACATGACGTGAGGTCCTGTGTGGAGCATACAACAGCTTTACTTGATTGCTGATGATGTGACTGGAGGATTAATAATGATGTGCAGCGGACTATGTGGAAAGGTGTCTTTTTCCTCTAGTGCCATCCCAGTGACGGTTGCTGGGATCTCCACGTCATTATGGTGTCGAGGCTTCTCTTTAACTATGGGATGGCGGTTTTGGACATTTTGGTGAAAACCCAGGCTGGACACATCATCAGCTCTCAGGTGAGGATGGAGCAACACTGTGTTTTTCCTGCAAGAGATGTGGGGTGTCAGACAGTCTCTTGTTCCTCCGCTTTTTGAATCGATAACCTCATTATTCTCTGTCAACTCAAATCCAACGGCTTCAAACCACAAAAGTCAAAAGAAAGTCGGCTTTTATTGGCATAGGAGGGTCCGGGTTTTGGGATTCTCGCTCAAAACCCCATCCTGTCCTCCCCTGAACCGCTTTTTAAAGATGGAGAGGCTGGTTTCAATGGTTATCACTCACTTACACGCCACAGACAGAGATAAAAGGAGAACTATAAAAAGAGTCAGGCAGAGATTACCATCACACACATTTGGTTTCTCCCAGCCCAAATCACACACGCTTATGTACttcatgaaacacacacacacatatctgtaCCTGTAAGAAGATGTATTGGTCCTGCACCACAAGTGAGTTGGTGTCAATTCGGCCACTGAATGGATACTGCCTACCCTCCTCTGAACACTTTTGTGCTCGGCAGGTAATATACTGCATTtctgtgagacacacacacatagatttATCAACGCAGGATACGCTTGTGCACAGGAACGCCTTGATCTACACCAAACAAAAAACAGATGATCAATATCTCTCACTCTCactggcacacacacacccacacaacaAACACAATCTAGAGCATACACACAAACTTCCCACACATCTCTATGTCTAGCCAAATTAATCAGTGCTCTCCATTATCAGTCTCTCTACTGGCCATCCATCCTCACTCagaagagaaagaaaagaggGGGTGGGAGGAAAAGCACAGAGAAAGATGTAGAGAGAGAGCAAGGAGGAGAAGAAAATAAGAGGCCGACACATAAACAACAGATTAGGATTTATACCTGTTTTATCTGTGGACTTTTCTCTAATAAAGAGCGGGAGGAGATAAAAAGTCTTTTAGAAATGGGATAAAgctattgtttttagtttttttctgtgtttggAGAGGGAGATTTTCC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00022647 lncRNA upstream 65450 20173818 ~ 20186011 (+) False XLOC_011367
TCONS_00024673 lncRNA upstream 637196 19606920 ~ 19614265 (+) True XLOC_011365
TCONS_00024672 lncRNA upstream 638336 19606920 ~ 19613125 (+) False XLOC_011365
TCONS_00024671 lncRNA upstream 641152 19606920 ~ 19610309 (+) False XLOC_011365
TCONS_00024670 lncRNA upstream 719642 19513571 ~ 19531819 (+) True XLOC_011364
TCONS_00024677 lncRNA downstream 345237 20717976 ~ 20725895 (+) True XLOC_011376
TCONS_00024466 lncRNA downstream 495571 20868310 ~ 20868536 (+) True XLOC_011377
TCONS_00024678 lncRNA downstream 565515 20938254 ~ 20940831 (+) True XLOC_011379
TCONS_00024679 lncRNA downstream 606513 20979252 ~ 20986376 (+) True XLOC_011380
TCONS_00024467 lncRNA downstream 717035 21089774 ~ 21090112 (+) True XLOC_011381
TCONS_00022653 mRNA upstream 7499 20237727 ~ 20243962 (+) False XLOC_011369
TCONS_00022654 mRNA upstream 7506 20237948 ~ 20243955 (+) True XLOC_011369
TCONS_00022652 mRNA upstream 44085 20205185 ~ 20207376 (+) True XLOC_011368
TCONS_00022651 mRNA upstream 44159 20204122 ~ 20207302 (+) False XLOC_011368
TCONS_00022649 mRNA upstream 67485 20174812 ~ 20183976 (+) False XLOC_011367
TCONS_00022656 mRNA downstream 127490 20500229 ~ 20518626 (+) False XLOC_011371
TCONS_00022657 mRNA downstream 131457 20504196 ~ 20517846 (+) True XLOC_011371
TCONS_00022658 mRNA downstream 197067 20569806 ~ 20588607 (+) False XLOC_011372
TCONS_00022659 mRNA downstream 204109 20576848 ~ 20590238 (+) False XLOC_011372
TCONS_00022661 mRNA downstream 216814 20589553 ~ 20592951 (+) True XLOC_011372
TCONS_00022650 other upstream 62066 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022634 other upstream 1452330 18798995 ~ 18799131 (+) True XLOC_011356
TCONS_00022631 other upstream 2073314 18175688 ~ 18178147 (+) True XLOC_011352
TCONS_00022623 other upstream 2226261 17914479 ~ 18025200 (+) False XLOC_011350
TCONS_00022622 other upstream 2330861 17914369 ~ 17920600 (+) False XLOC_011350
TCONS_00022660 other downstream 212589 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022664 other downstream 243277 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other downstream 243460 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022668 other downstream 253034 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022679 other downstream 1191868 21564607 ~ 21607709 (+) True XLOC_011388

Expression Profile


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