Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00022657 |
| length | 1511 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 5 |
| gene id | XLOC_011371 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 20500229 ~ 20518626 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045746 | negative regulation of Notch signaling pathway | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060929-1210 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of Notch signaling pathway and nervous system development. Predicted to be active in plasma membrane and postsynaptic density. Orthologous to human NEURL1 (neuralized E3 ubiquitin protein ligase 1). |
| ensembl_id | ENSDART00000190539 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024676 | lncRNA | upstream | 66898 | 20251461 ~ 20437298 (+) | False | XLOC_011370 |
| TCONS_00022655 | lncRNA | upstream | 107394 | 20251491 ~ 20396802 (+) | True | XLOC_011370 |
| TCONS_00024675 | lncRNA | upstream | 131457 | 20251461 ~ 20372739 (+) | False | XLOC_011370 |
| TCONS_00024674 | lncRNA | upstream | 238484 | 20251461 ~ 20265712 (+) | False | XLOC_011370 |
| TCONS_00022647 | lncRNA | upstream | 318185 | 20173818 ~ 20186011 (+) | False | XLOC_011367 |
| TCONS_00024677 | lncRNA | downstream | 200130 | 20717976 ~ 20725895 (+) | True | XLOC_011376 |
| TCONS_00024466 | lncRNA | downstream | 350464 | 20868310 ~ 20868536 (+) | True | XLOC_011377 |
| TCONS_00024678 | lncRNA | downstream | 420408 | 20938254 ~ 20940831 (+) | True | XLOC_011379 |
| TCONS_00024679 | lncRNA | downstream | 461406 | 20979252 ~ 20986376 (+) | True | XLOC_011380 |
| TCONS_00024467 | lncRNA | downstream | 571928 | 21089774 ~ 21090112 (+) | True | XLOC_011381 |
| TCONS_00022653 | mRNA | upstream | 260234 | 20237727 ~ 20243962 (+) | False | XLOC_011369 |
| TCONS_00022654 | mRNA | upstream | 260241 | 20237948 ~ 20243955 (+) | True | XLOC_011369 |
| TCONS_00022652 | mRNA | upstream | 296820 | 20205185 ~ 20207376 (+) | True | XLOC_011368 |
| TCONS_00022651 | mRNA | upstream | 296894 | 20204122 ~ 20207302 (+) | False | XLOC_011368 |
| TCONS_00022649 | mRNA | upstream | 320220 | 20174812 ~ 20183976 (+) | False | XLOC_011367 |
| TCONS_00022658 | mRNA | downstream | 51960 | 20569806 ~ 20588607 (+) | False | XLOC_011372 |
| TCONS_00022659 | mRNA | downstream | 59002 | 20576848 ~ 20590238 (+) | False | XLOC_011372 |
| TCONS_00022661 | mRNA | downstream | 71707 | 20589553 ~ 20592951 (+) | True | XLOC_011372 |
| TCONS_00022662 | mRNA | downstream | 87167 | 20605013 ~ 20611312 (+) | False | XLOC_011373 |
| TCONS_00022663 | mRNA | downstream | 89641 | 20607487 ~ 20611306 (+) | True | XLOC_011373 |
| TCONS_00022650 | other | upstream | 314801 | 20175646 ~ 20189395 (+) | True | XLOC_011367 |
| TCONS_00022634 | other | upstream | 1705065 | 18798995 ~ 18799131 (+) | True | XLOC_011356 |
| TCONS_00022631 | other | upstream | 2326049 | 18175688 ~ 18178147 (+) | True | XLOC_011352 |
| TCONS_00022623 | other | upstream | 2478996 | 17914479 ~ 18025200 (+) | False | XLOC_011350 |
| TCONS_00022622 | other | upstream | 2583596 | 17914369 ~ 17920600 (+) | False | XLOC_011350 |
| TCONS_00022660 | other | downstream | 67482 | 20585328 ~ 20592958 (+) | False | XLOC_011372 |
| TCONS_00022664 | other | downstream | 98170 | 20616016 ~ 20626819 (+) | False | XLOC_011374 |
| TCONS_00022666 | other | downstream | 98353 | 20616199 ~ 20620945 (+) | False | XLOC_011374 |
| TCONS_00022668 | other | downstream | 107927 | 20625773 ~ 20630315 (+) | True | XLOC_011374 |
| TCONS_00022679 | other | downstream | 1046761 | 21564607 ~ 21607709 (+) | True | XLOC_011388 |
