RNA id: TCONS_00024677


Basic Information

Item Value
RNA id TCONS_00024677
length 7800
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_011376
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20717976 ~ 20725895 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACAGGAGACGAAAAACTAGGAAATGTTTTAAATAGTGTTGTGTTTGGCTAGAAAAGGAAGAACAGGCAGACAGTGAACTACAATGTTTCAGCTACACAGCTGGTGCTCTGATTGTGCAAGTGAAACAAATTTTTTACAGAATTTATGCAGGCAATAACTAGTGTGTATACCGCggaattaaaaacttaaaacaaaatctttaaaaaaaagacattttgttgAGATGAGGCATGCAGACAACATAGtactacacattttttttctaacaGAGTTCACAAACAATGAAGCAGGTTTAAAATCCTCATCAACAATGTTCCTATAATCAACTCAACACAGATAGACTGTTCAGTGCCCCACCCCTCATTATTTTCTCTGGAAGGTAAGGGAGAGAGAAGGGGAAATCTGACAGGGACAGATACAGAACGGTACAGTCACACAGCACAGTGATGAGAGAATGACAAGAATGACAGCTATTATTCACGCCACAGGCAATCCAATCAGTCACAACGGCTCATGCAACTAAGGATCAAGTAAAGTTTTCAATAAAGTTTTACAAACTAGGCTTGATCTCCGCGACGGGGGGCGACCTGCGAGCCCCTTCGTTCTTACTGCCCTCCTTCCCTCCTCCAGTCCGCTTACTCCTCCTCTCACTGCCCGCCGCCCTTTTGGCCTTTGTCTTCGAGGGTGTGACCCCTCGGGAGGAGCCAGCGGAGAGGGAGGGCTGGGACTGAGAGGGGTCCGATAGTGAGGTGCTTCGTGATGTGCTGCTGTCCTCCTCCGATTGCGACTGCTCTCCCTGTGTCTGTTTCTCCTCATCTGAGAGTCGTTCGGCCACCTTTATTGCTTCTCCACTAACATTCTTTAGGAACTCAATTGACTGCCTGCACACTTCGCTAAAGTTGCCTCGACCTGCCTCACTAACTGAACATCTGGAAGCACCAGATGACCTGTCTTTGAAAGGAAGCCTAGTTGGAACTACTGGTCTGACTGATCTCTCTGACTCAGGCTTACTTGATCTTGGTACTACTTGGAAACTAACGGCACAATTTTTTTTCATGTCTTTGACAGGAATTCTAGACTTGTGCTCAGGTGTTATGGAGACAGGGTCCACTTTCCTTGCCTCTGGCCTCACAACCTGCTTAGGTTTTTGCTTtcctgaactgtgtgtgttaaaACTGAATCCAGCTGCCTTGACTGGGAGCCTAGACTTTGGCTGCCTGTTCTCAAAGACTACTTTATTCTGATGACTTTGAGAAGCTTTCTCCACAGACTCCCTACAGAACTGAGCTTCTATTCTACTAGCTTTCTGTAAGGTGGGTTCAGAAGATGACTGCAAATTGAACACTACACTTCCACACTGGATGTAGTTGGCCTGCACATTGGATGACTctaaattattgttgttattgtagtTTTCAGAGGGGTAATCTTTTCTGCCCATTGTGGGAGAGGTAGTGCATCTGCTATCAAAGTGACTTTCGGCTAACTGAGACTCCAAACTAATGTATTCCGGCATCTGACTGTCTGAGGACTCAGCTTTTACATCAGTCAGTTCAGCTGAGCCAGGGTCTTTCTTTATAGTAATGGAAGCTGCGATGCCCATCTTAATGGGGGTGCGTAATTTGGGATCAACCTTGGAGGCTGTGACAGTGCATGAGGTGGTGTCAGCGGATGGAGGTGCTTCCAGGCAGTCAGCACTGCCCTGCACTGTGCTGCCTCTGGATGGTGTTAAATCTGCAGTTGCCTCTACCTTCCCCTCTACAGTTCTGTCCCCTGCCTTTGAGTGAGAGGTGACTATCCCCGCATTCCTGCCCCCTTTCCCCTTGTCCCCTGACTGCCCATCTGATGTATGCTCACCAATCTGGAAAAACTGAAGTCTCTCTTCAACAAAGTCCCTCTTGCTCATGTCAATAGCACCACTGCGGGTCATCTCAAACATCTTGCCCTCGTGGAAGGGGAAAGGGTTGGGCTCACTAGTTGGGGTGCTCTCATCTGTTGGGGTTCTTGCTGGAGTGGTATCCGGTGTGGTAGCTTGTGATTTGTCTTCCACTGATAAAGCACAGGGCTTCGGatcttcatctttattttttgcatcAAAAGCTCCTTCCTCTCCCTCTTTACCAGACCATGGATCGAAATCCAAGCCTTTAGTAGCCACAGTTTTAAAAGTAGTGTTCATGTCCTCCTCTAGTTGATACTTGAAATAATTTTCTGCCGAACCTTGTCTATCAGGGTGCCTTCCCTCCAAAGAATAGATTTTATCCTCTTTGCCATTGTCTGACTTTTTACCAGATGACCTCTTTGTTTTTGCCTTTTCTCCTGTTTCCTCATTTGGTGTGCTCTCCTCTTCAATCACCTCAAGTTTGCTCTGGTTGAAGGAACGATCTCCTGTTTTCCCCTCATTCGACAGGCTGGATGTTTTAGGGTCACTCAGTCCATCGTCCTCATCTTGTAGATCATATCCATCAAGAGAATCTATCTCAGTGGCATCTGTATCATGTGAAAACTCGGCAGTTGTTGCTATTGAGCAATCAGTGATAGATTGATCATTTCCATTTTGTTCACAGTCTACATCATCTCCTTTCACAATGCCATTGATACCTGACTCCTTGTGTTGTGAGCCGTTTCTCTCTGGTTTCCTAGGTTTAACACGTTTCTCACACTCTTCAGCCATTTTGAAGGTGTACTTTTTAAGTGGGGCAGGCTGAAAAACAGATTCATCATCACTGGAATCACTGTTATCAGCTCCAGGTGGAAGAGGGGAAGGAGGCTGCACTCTGATTACTGGTTCTGCAAGGAGATGCCTGTCATGTTCTTCTTGAAGGTTTACCTCTATCATCTCTGTTTCTGCTTCAGAGGAAGGGCACGACGCCCTCTTTTCAGGGTCAGCATGCTCGGTCTctaatggtggtggtggtggaaaCTCGATGTAAGCTATACGTTTGTCTTTTGACCTTTTTCCAGTCGAGTCTTGCTTTCTTTTTGATGATTCTGGTGAATGATTGGCAGGTTTGACATTTTCTGTTGGTTTTTCCTTAAAAATGAATGTCTTGGGCTGCTCCTCTTCCTCAGACTCCTCTGGTATTGGGCTAGGCATGCCAGCCATGGAACCAATGACAGGCTCAGGAGCCCTGGAGTTCAGGTCATAGCTGACCTCATCAGAGGTAGGTGTCTCAGGGGTTACAGGACTTCTCCCTGAACTGTCCATAAATGTTACCTGCTCTAACGTGTCATCTTCAGGGCTTCCCTGAGGTGATTGTGGCTGCTTCTGTTTTACAGAATAAAAGGCTCCACGTGTTTCATGTACTGTCCTGCTCTCGTGGCTTACTACTTTTTTGTAAGTGCTTAGCTGCCCAGTAGCGGTTTCCTTCTCATACTGTTTACCTACTTGAATGCTGACATACACAGGAAGAGGTTTTATATCTGCACCTGGGGTCACTTTTTCAACGTACTCAACTTGGTTTTCATCCACTCCATTACAGACTATATTAACAATCTGCCTATTAGAATCTGAGTTCACTACAGACGACACATCACTATGTGATTTGGTACCACCTGAACTGGGGTGCTGTGTATTTCTTGCTTTGTGAGACCCTGTTCTCTCAGATTTAATGGAGGAATCTAACTTTAAAGTACTACTTTGATGATGATCTATAAAACTAGATGACACCCTAACAGGAATTTGTGATTCCGAGTTTTTTTTTAGAGCACCATTGCATTTTTCAGTATTGCTTGGGTCTTCTCGGATTACCAGCTCTGTATAAatgatctttttagttgtttcttctTTTGTGGTATTACCTTCTCTCAATAAATGAGACTCATTCTGTGAGTTATCCTTTTGTCTATCATGCACTAGGGTGTGTGTGAGCTTTGTCTTTTGACCTTTCAGTTGCCCATTGCCATGATTTTCCCAAGTTTTGTATATTTTCCTGTCTTCATTAGAAATTTGCTCCTTGCTGTAAACATTTTGGTGATGTTTTAGTGAAGAGTTATCTGACCTATTTCCTTGTCTGTCACTTTGCTGATTATTGGCAAATGCTTGAGCCTTTCTAACATTGTAACTGTGCCCACCTTCATTATCTTTTTTGGAGCTTCTTTCATTATCTGAAGACTCTCCTGATTTAGGGAGATTCCCCCCTGCAAAAACTTGATAAACAGGCAGCTTACTTTCCTGCAACTTCCTCACTGGAGATGCAGAAGTTTGTCCCCACTGCGGCCCTTTATCTTGTTTCTGGGCCTCAGACTCAAACTTCATTCTTACTGAGCTAACCTTAGATGTTGAGGGTTGGAAATATTTAGATGACTCACTGGCACTGCTGGCAGATGAACAGTCACCCCTTTTTGGGTCATCACTGTATTGAAGCAAGACTCTTCTTTCAGGACTACTAGGCAAACTAGCGGATTTTCTATCATGAGAACCATACTTATCTCTAAACCTGTCTCTACTCCAGTCTTCTCCACTCCCCCCATTTCTATGCCCTGATCTCTCTGGGCTACTGCAAGTTGAGCTGGGCCCAGATCGAGTCTCCCTTGCATCTTGTCTACGATGCTTCTTCTCGGGGGACTGAAGCTCATCATTCAGTTTTTCAGTTTTATCTCGAAAGAATTGTGAGACTTCAGTAAGTTTTTCTTCTGCCTCTTTGACAGTTCTGTCTACTCTGTCCTCATATTTCTGCTTTTCTCTGCCTTTTTTCTGCCCATCCTCAGAAACTCTCATCCAAATTGACTTTTTTGGACTATCAGGATCAGAAGCATACTGCAACAAAGTGAGTTTATCATAATCATCGTCTGATGATCTACGTGACCTATCAGGCTTCAGCATGAATTCTCGAATCGATCCACCTTGTGTGCCCTCGCCATAGTATCGAGATCGGTCAATAACAGATTCATCTGAGTCTGAATGGGAAGAGTCAAATTTTTCTGACAAAAGCATTTTATCTGCAAACTTGTATGAGTCTCCCCTTGTTTCAGAGGACTCATCATCTTGGTATTCCAATGATTGGTGACCAAGTAATTTTAAGGACTTATCGTCCTCCACAGAGACAGGCATGTGCATTCTAGAATCTAGATAGCAAGGAAGAGATTCTTCAGGCTCTATGCAATTATGTTGCCCAACACCCATCCCATTTTGTAGTTCTTTCATGCTACTTTTGCCTTGATATATATACATTTCCTTCTCAGGGTGATTTTTTGTTTCTCTGATAATCACTTCAGTTGGTTCAGCTTTGTTGCCTTTCTCAATGTGAACCTCAATAATGCGCTCAACTTTGGGCATTGGGTCTAGAGGCCTAGCAGATGGGTCTGCTCCTTCGCTGTTGCTTTTGTGTTCAAACAATCCTGTTAACTCTCTGGATGGGTCCTTCCCAGACTGGAAGGCCTTCATTATATCTCGTACAGACATGGTCTCCTCCATTCTCTCAGATGCCACCTCTTTAGTGGGAGGTTTGTGGTATACCATTCTTGTAGTTGTTGTTATGTGAGTTTCCTCTTTGACCCGCATGCCTTTGCCCATCACATCCTCCTCTGCATTGACTCTGGCTTGGTAAGCTTTAACTCTTTCTTTGATTGATCCACCAGGTGATCGGGGCTCACTGTCTGCACACCGCAAGAGAGGCTTTGTCATTCTAGCATCCTCCAGTGCTTGCTCCTTAGAATCTTCAGGAGGTTCATAGCTACGTATGACATGTACAACCTCAGTGCGTGTTTCAGTGATGACAGGGGGAATCTCCTGAAAGAGGCCTTTGGGCCCCATCCCCTCAGCACTTTGGGGAGCTGAGGGTGTCCTCTCACTGCGGGTCTCAAATCCACTATCTGAAAGCGGACTCTTGTCTTGGTCATGAGAAACATCATCAGGAGAGTCCAGTGCTATTTCAGGGCCAAATAATGCATCAGCTAGTTTTGAAAGTTCTTTTTCAGAAGGTGAGGGACGCATATTTGTTGGAGGCATTTTGAGTTTGTGCTCCTGTAATGCCATTGCAGGTTTCAGGACACGTTTCTGTTTTTCCTCTCCATCTCTCCTTGCCTCCTCAGTTCTTTGTTTAGCCTCTGCTATTTTAGAAAGAGAACTTGTGCCAATGTCATTGGTTAGATAATCAACAACTTTTGCAAGGTTAAAATCTCTGTCAGATACAgcttttgttttgacttgagGAGCTACTGTTTCATATCGAGGGGGGCATCTCCATTCATTTTGTGGATTATCTTCAATGTCATCCTCTAGGACGTCCTTTTTGTGGTTTTTAATATTTGCCTTACTCTCTCTTAAAACATCCTTGCTAAGTATTTCACTGACTTTGACCAGGTCCTGTTTTACTTTCTCTACAATCTTGAAAGGCTCCTCATCCTCCACTTTATGTTCCTTAGAGTCAGAATGGTAACCTTTGGAGCTTGAATTTGTATCAGTTTGCAAAATTGCAGACATTCTAATAAGGTCCTCCTTCATTTCAGCCACATCTTTTAGTATCTCCTGACTGTTGGACAGAGGGGATGAAGAGGTAGCAGATTTTAGTGTTCCTGGGGACATGTGCAGGGGAGTCTTGACAGGAGACAGAGTTCTGGCAAAAGAGGACTGATTCTGGGCATTTACTTCTTGGGGCATGACCTTTCTAGGAGACAGAAGAGCGGCTGTCGATTTGGAGACTTCTGGAAGCTTTTTAAACTGGTGTTCTGGTAAGACATTTATAACTGAATAGACAGGAACCGTAATAGTGCTGGAAGTTACAGACGTTGTGGAGTTGGGAGGTGATCTGAGGGAGGCATAGAGTGAGCTGGAGGCAGAGGAACGAATGGATTGGTAAGAGGATGAGGGAGTAGAGGAAACTGACTTTAGTGTGCCGTAGCCAGCAGAGCAGgaattaaatgttttttccaCTTCCTCAAAGGCAGCATTCACACTTGTTGTTGCTGCATTTGTTGTGGCTTGAATTCTTTCCTGCAAGGTGCTGGTAAGATGGGTTGTTGGGGAGGAGGAGCGATATTTGTTTGGGGAAACTGTCCCATTGATAAGTGCAGCTGCTGTATTGGCTGAGCCAGATTTCAGAGGTGAGGAGAGGGATGACAGGTATCCTCTGACTGAGGCATCAGTGCTGGTTCTGACAGAGGAGAAGCCTGGGACAGTTTTAATTGGGGAGCAGGTAGCTGGAGAGTTTGAGGTCACAACAGACTTATATGGTAAACTTGAGCTATACATGTTTAGTGAAGACTTGGGTGAGGCTGGAGGGGACAAAAGGGTGGGGGAGGCCTGAACTGGATACTGAGCACCTTGAACTACAGTCTTTATTGGTGAGGAGATTGTTCTGTAGGATCGAATTGGGGATGCAACGTCACTGGCAGATTTGATGGAAGACGCTGGTGAACCTCCAATGATAGATTTAATGGGAGAGGCAGAGTTCACAGACCACACCGACCTCAGTGGGGAGGCTGAGGGGGTGTTGGAGGAGGAGCTGGAGAGGGAGCCAAAGCCAGACTTGGTCTGGATTGGGACGTTGACTGGAGAGCTTGTCGCCCAGGCCTGGTAGGAGCGCGTCGTAAAGACAGGCTTGTAAGCGTAGCCAGAAGGCTGCGTCGTGGTTTTTTGAGGGGTGTTATGGCCTCTTTCTGCTGTTTCTatcataattaaattaataaacaaagtaaaCGTAAATGGTTAAagaagagagaaaagagagacgAGAAAGGTTTAGTCAGGGGATAAATCCAAATACAACCAGCAGTGAAAATTCTGAAATTGTGGAAGCTTTTGAAATTGGAAAACAAAGTGAAATACATAACTCAAACTGTGGCAAATGGGTGGAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024676 lncRNA upstream 280678 20251461 ~ 20437298 (+) False XLOC_011370
TCONS_00022655 lncRNA upstream 321174 20251491 ~ 20396802 (+) True XLOC_011370
TCONS_00024675 lncRNA upstream 345237 20251461 ~ 20372739 (+) False XLOC_011370
TCONS_00024674 lncRNA upstream 452264 20251461 ~ 20265712 (+) False XLOC_011370
TCONS_00022647 lncRNA upstream 531965 20173818 ~ 20186011 (+) False XLOC_011367
TCONS_00024466 lncRNA downstream 142415 20868310 ~ 20868536 (+) True XLOC_011377
TCONS_00024678 lncRNA downstream 212359 20938254 ~ 20940831 (+) True XLOC_011379
TCONS_00024679 lncRNA downstream 253357 20979252 ~ 20986376 (+) True XLOC_011380
TCONS_00024467 lncRNA downstream 363879 21089774 ~ 21090112 (+) True XLOC_011381
TCONS_00024680 lncRNA downstream 941902 21667797 ~ 21703491 (+) True XLOC_011389
TCONS_00022669 mRNA upstream 77471 20639180 ~ 20640505 (+) True XLOC_011375
TCONS_00022667 mRNA upstream 97026 20616576 ~ 20620950 (+) False XLOC_011374
TCONS_00022665 mRNA upstream 97032 20616196 ~ 20620944 (+) False XLOC_011374
TCONS_00022662 mRNA upstream 106664 20605013 ~ 20611312 (+) False XLOC_011373
TCONS_00022663 mRNA upstream 106670 20607487 ~ 20611306 (+) True XLOC_011373
TCONS_00022670 mRNA downstream 197796 20923691 ~ 20929461 (+) True XLOC_011378
TCONS_00022671 mRNA downstream 376406 21102301 ~ 21123575 (+) True XLOC_011382
TCONS_00022672 mRNA downstream 400600 21126495 ~ 21152173 (+) True XLOC_011383
TCONS_00022673 mRNA downstream 569237 21295132 ~ 21311413 (+) True XLOC_011384
TCONS_00022674 mRNA downstream 726363 21452258 ~ 21467430 (+) True XLOC_011385
TCONS_00022668 other upstream 87661 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022664 other upstream 91157 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other upstream 97031 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022660 other upstream 125018 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022650 other upstream 528581 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022679 other downstream 838712 21564607 ~ 21607709 (+) True XLOC_011388
TCONS_00022689 other downstream 1191553 21917448 ~ 21917564 (+) True XLOC_011392
TCONS_00022702 other downstream 1851735 22577630 ~ 22580193 (+) True XLOC_011401
TCONS_00022706 other downstream 2034838 22760733 ~ 22782721 (+) True XLOC_011403
TCONS_00022707 other downstream 2101168 22827063 ~ 22827147 (+) True XLOC_011404

Expression Profile

//