RNA id: TCONS_00024679


Basic Information

Item Value
RNA id TCONS_00024679
length 2442
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_011380
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20979252 ~ 20986376 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCGTTCCATTTTCTGCACCTGCACTCGCTCGACACCTTTACGATATCAGAGAGGAAAAACTCTCCCAATCACAGGCAGCAAATGGCTTCTGGTCTACTTCAGGAGACACAGATTTGGATTTACAGAACATTCTTACAAGGCAAAAACATGAACATTGTTCCCTTTGTCAAAGACCTAAATGTGATACAAATGCCAGTGCCCCAtccagggagaaaaaaaagaaagaaaacattctCCCATAATGTTCCACTCAAGGAGAAAGGTAGCACATCCAATAAACAGAACAACACAGTTGTTCCCTCAGAAGAAAtacagaaaagaaaaagaaaaaagtatgaCACTGTTAAAACAGTGAAGTTATTTCAGGTGAAAGTGGCAAATAACTAAATGAACATCCACGATTTGTCAGATGCATGAAGCATATGAATCTAGATCACAAACCCTGCTCAATAACAATATACAACATCAGTTCCTCAACGGTAAAGGAATTTAATCTCTTCAAGTCCATAATTTGCACATAAATCTTATGAGATTTTCACTTCGGACCTACAATCAAGCAATTAATAATATCACTGAGACTGAGCAATAATACAAGAGTACCACAAGCGTTCTGTGCAATATTTCAGAGACCATCATTATTTTCCttctacaaaacaaaaacaaacctcaCAAGCATTTAAAAGAGATGAGCATGGCTTCTTATgttgcactctcagaaataaaggtatgtgagctgtcactggggtggtaccttttcaaaagatacacatttgtacttaaagggccCATATTAGTAtgtcaaaagtatatattagtacctgcaaattttaagaggaacatttttgtactttttaggttctaatatgtacccttgaggtatttaTATggaccttttttatttatttatccaaattaattttttttgtgtgtgttaccTTTTTCTCCGAACCCCTAGAAAGGAGGTAAAGTGTAacagtacaaatttgtaccttttgaaaaggtaccaccccagagaCAGTTTGcattcctttatttctgagagtctgGAATATTTAACCATAGTACATGTTTTTAGACAGCTCTTTTTATGCATGATACATTCTCTGTAGGCTGTACCATGAACCCTCTATAAACCTaatgaaaatgtaaacaaatataagACCAGGTAACACTGATTTACTCTGAAAACTTCAAGTGATATACATGATACATTTGCTTGTGGGGAAAAAATGAAACGACTCAGTTTAACAAATTGGAAAAAAGAATTAGATGATGAATTTCTGGTCAAGGACAAGCATGTGAAATATCATACATTTAGCAAAATTAGCCCTTGAGGTTACTTTATGGCTAAGAGCTGAGTAAAGCTacatacaaacacatttatacacacagaTTATACTCCCCTGCTTGACACGTAACACATTTCGcacatacaaaaataataataatccattaTTCATGTCAATATGAAACGCTTACTGTTGAAAAGTACCTAAAGCAGCTTGCATTTTATATCTGTGCTACAAGTAAAATGCAAGAACTGATTGTCCTAAACAAATCACTGGAATTTTATGGCAAATATTCCAAATGACTCATTAAACTTCATTTACACCACAAAATATTATTGACATCTTTTTTTGAGATGACCCTTTCAGACCACAGACTCAACAGTAAACAAAACaggcaaaaaattaaaataatccaAAGGAAATTGAAGTAAACTGATAATgcctttaaaaaaagattaacataaaaataagaaatcataatgaaactataaaataaactgtatttaaaatacaacattACCACAATGACCAAAGAGTAATAAAACACTGAACATGAATACAACAGTCTGGTAAACAACATAAGCATCGGCTGGTTGTGATCACCAACAGATGATCTTTATGTGGGATCCGGAAATAACCTGCTAAATAAGTGCACGTTTGGCTTTTGACATTGGACAGTCCGACGTTACAAATTACCTTTCATACCGGCAAAAACAGCAGAGTTTATGGATTAAAGTGCTAGACACCAATACTGAAGCGCACTTGTCAACAGTATGGTTAGATTTTTTAAACTCTGTGCTTTGCCTGTTTACCCCAGAGTAAATGCAAGACAATATTAATGGCACATTCTCCTAAGAACGTGGAACTAATtccattttatgtatatttaacaAAGTCAAAAAGCAACTTAAATAACTCCTGAGAGAATCTCTGTTGCTTTTTGGCTTTCTATATGTAGCATGAGTCCAGTATGAAGTGGTTTGAGGTCCTCGATCACCAGCGACCGCTGACACTAGTCATGTCTGAGTGGAAGTGACGTGTCAGTCGACCGCTGGCACCACCTTCTAGGAAAGAGGAGCGAATGTTGGCGGTGTCAAAGAGCTTCCTCCTGCTCTTATTCAGCTCTGAGGAGACATTTAATATATAATCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024678 lncRNA upstream 38421 20938254 ~ 20940831 (+) True XLOC_011379
TCONS_00024466 lncRNA upstream 110716 20868310 ~ 20868536 (+) True XLOC_011377
TCONS_00024677 lncRNA upstream 253357 20717976 ~ 20725895 (+) True XLOC_011376
TCONS_00024676 lncRNA upstream 541954 20251461 ~ 20437298 (+) False XLOC_011370
TCONS_00022655 lncRNA upstream 582450 20251491 ~ 20396802 (+) True XLOC_011370
TCONS_00024467 lncRNA downstream 103398 21089774 ~ 21090112 (+) True XLOC_011381
TCONS_00024680 lncRNA downstream 681421 21667797 ~ 21703491 (+) True XLOC_011389
TCONS_00024681 lncRNA downstream 1083556 22069932 ~ 22071151 (+) True XLOC_011395
TCONS_00022700 lncRNA downstream 1572679 22559055 ~ 22572656 (+) False XLOC_011400
TCONS_00024682 lncRNA downstream 1572697 22559073 ~ 22572656 (+) True XLOC_011400
TCONS_00022670 mRNA upstream 49791 20923691 ~ 20929461 (+) True XLOC_011378
TCONS_00022669 mRNA upstream 338747 20639180 ~ 20640505 (+) True XLOC_011375
TCONS_00022667 mRNA upstream 358302 20616576 ~ 20620950 (+) False XLOC_011374
TCONS_00022665 mRNA upstream 358308 20616196 ~ 20620944 (+) False XLOC_011374
TCONS_00022663 mRNA upstream 367946 20607487 ~ 20611306 (+) True XLOC_011373
TCONS_00022671 mRNA downstream 115925 21102301 ~ 21123575 (+) True XLOC_011382
TCONS_00022672 mRNA downstream 140119 21126495 ~ 21152173 (+) True XLOC_011383
TCONS_00022673 mRNA downstream 308756 21295132 ~ 21311413 (+) True XLOC_011384
TCONS_00022674 mRNA downstream 465882 21452258 ~ 21467430 (+) True XLOC_011385
TCONS_00022675 mRNA downstream 491516 21477892 ~ 21494295 (+) False XLOC_011386
TCONS_00022668 other upstream 348937 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022664 other upstream 352433 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other upstream 358307 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022660 other upstream 386294 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022650 other upstream 789857 20175646 ~ 20189395 (+) True XLOC_011367
TCONS_00022679 other downstream 578231 21564607 ~ 21607709 (+) True XLOC_011388
TCONS_00022689 other downstream 931072 21917448 ~ 21917564 (+) True XLOC_011392
TCONS_00022702 other downstream 1591254 22577630 ~ 22580193 (+) True XLOC_011401
TCONS_00022706 other downstream 1774357 22760733 ~ 22782721 (+) True XLOC_011403
TCONS_00022707 other downstream 1840687 22827063 ~ 22827147 (+) True XLOC_011404

Expression Profile

//