RNA id: TCONS_00022686


Basic Information

Item Value
RNA id TCONS_00022686
length 2477
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_011391
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 21887823 ~ 21913328 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGTGACGTATGCAGCCACTTCCGCTCCTGCAGGAAAAACACCCGTGAAGTTTGTGAACGGGGACTCGAGCAGGAGGAGATGGGCTGAACCGAACCACTTCAGCGATAATAAACCGACCGTTTCTGATATCAGAAGGAGGTGGAATGAGTAGTGTGAAGACAGGGGGACATGCCTTACGTGGACCGGCAGAACCGCATCTGCGGTTTCCTGGACATCGAAGATGTGGAGAACAGCGGCAAGTTTCTGCGGCGCTATTTCATTCTGGACACACAGCAGGGTAGCCTGCTCTGGTATATGGACAACCCACAGAACCTGCCCGTTGGTGCCAagcatgtgggtttcctcagtcTCACCTACATATCCAAGGTCAGCGATGCCACCAAACAGAGGCCAAAAGCTGAGTACTGCTTTGTCATCAATGCAGGAATGAGGAAATACTTTCTGCAGGCTAATGATCAGCAGGATCTTGTGGAATGGGTCAATGCTCTCAACAATGCAACCAAAATCACAGTTCCCAAGTCCTCTGATTCAGTTCACTCTGAGAGTCAGAAGCTAACTTCAAATGGCAACAAGAAACAGGTCCCATATAAGACTGAAATCATTGCAGGAGTGGCTGTCGTCACACAGACACAGGATGGAGAGGTGGGACACAGTGTTGCAGGAGAGAAGTTGGGCTTGAGGAAGCCTCCGAACCGTCCGCCATATTTGCACACGAGAGCAGGGCAGGATCAGGCCGTTATTAAAGCAGGATACTGTGTCAAACAGGGGGCTCTGATGAAGAACTGGAAACGAAGATATTTTGTTTTGGAGCAGAACTCAATGAGTTACTTCAAGTCTGATCTGGAGAAGGAGCCATTGAGAATTATTCTTCTGAAGGAGGTCCATAAGGTACAGGAGTGTAAACACAGTGAAATAATGATGCGCGACAACCTCTTTGAAGTCGTCACAACCTCAAGAACATTTTTTGTCCAGGCTGATAGTCCCGAGGAGATGCACGGCTGGATTAAGGCTATTTCAGGAGCTATTGTGGCTCAGAGGGGCCAGGGCCGGTCTGCAGCCTCTGAGCACATTGTTGGCGGCTCCTGTTTCTACCGCCAGCACACGGGTTCAGTCATCCCCTGGACGGCCAGCCCTGCCGTGTCAGGTCACCCAGAACGCCATGGTCCCGCGAGGCCTGGCATGGGACAGCGAGCACTTCATGAGCCTGCTGCCCCTGCCCCGTCCACACGCCCGCCTGTCATTGCAAGAGACCCGCCTGTCCAAGTGACTCACGAATCGCCCTGGCGGAGACGCAGCAGCATGGGAATGTGCGACGCTCCTTTACCCCAACTTGATCTTGACAACGCAGATCTTCCCGTCAGTGAGGTCTGACTGTTTTATAGTAAACTTTTAACTCGGACAGAAATATCAAGGTGTGATAGGTCTTCAAAAACTGATCGGATTGAAAGAGCTCATGTTCGTTTTGATCAGGAACACTACATTAGATTGATTCAAACACCAAAGATTCTTCAAAGTACCCCCCAACCTTCTTTTTTGGCTAAATATCACCGACTGCATTGGAGGAAGTGAAGATTGACATGGATTGGGGTTGGAAAGTGTTTTTGAGACATGATTCCCTTTTAATATCTGAAAACTTTCCTTTACTGAGGATAACAGAACATGCTTTTTTTCTGTAcagtttttttaaggtttttctTTGTGCTCTAATTGTGACTAATTGATCCTGTGGACTAAGCCGGAGTTCATTTTAACTCCTCATTTGCCTTTActctacatacatacatatgggTGACTTCATGTAGTTGTAATATTTTTGTCTGTCATTTGCTCTGCTAACTGAGGAATCAAATTCACTTGTTATTTAATAACTCAGTGTGATTACGGTACTCAGTTGGATTACGGTAAAACCAAGCAGCTTGTAAAGATACTGTTTAATTGGTCcatgttcctgtcatttttctggcATCCTGATAAGACTATATGTGTCTGACCAGATGAGTGAGAGAGGTTGTTGTTGATGAATTGTTCATTTTGTGGTTTGAGTTGTTGGGATTTGCGTATGACTACTATGACAAAATGCTTTTCAGTGTAAGTTTATCTTCGCACTGATTCATCATTTTTGCCCTGTCTAAAAAAAAAGTGCCTCTCTTTTGCTTTCAAAGGTTTGGCGGTTTTAACCctcagttttgtttttgtgttgtaacCATTTTAatcttgtttgtttatattatttattataagaaAAAGCAATAAACCAAGTCTGAATTATTGCTGTTGATTGGATATATATTACACTTTCGCTCCCCATAGACAATTATTTAAATAGTTAAGCCCATAaaataaatctgtcatcatttactaggACTTGTGTACAGTAGATCCAAACACGAGAAATTCAAAtagacaaatgaaaataaatgaagtcTGCTCTCCCAAAGCGCTGATGTTTAAACAATAAAGAGATCAACAAATTCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2780 Predicted to enable PDZ domain binding activity. Predicted to be active in cytoplasm and membrane. Orthologous to human PLEKHA1 (pleckstrin homology domain containing A1).

Ensembl:

ensembl_id ENSDART00000131929

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024680 lncRNA upstream 184332 21667797 ~ 21703491 (+) True XLOC_011389
TCONS_00024467 lncRNA upstream 797711 21089774 ~ 21090112 (+) True XLOC_011381
TCONS_00024679 lncRNA upstream 901447 20979252 ~ 20986376 (+) True XLOC_011380
TCONS_00024678 lncRNA upstream 946992 20938254 ~ 20940831 (+) True XLOC_011379
TCONS_00024466 lncRNA upstream 1019287 20868310 ~ 20868536 (+) True XLOC_011377
TCONS_00024681 lncRNA downstream 156604 22069932 ~ 22071151 (+) True XLOC_011395
TCONS_00022700 lncRNA downstream 645727 22559055 ~ 22572656 (+) False XLOC_011400
TCONS_00024682 lncRNA downstream 645745 22559073 ~ 22572656 (+) True XLOC_011400
TCONS_00022711 lncRNA downstream 1308849 23222177 ~ 23232294 (+) True XLOC_011407
TCONS_00024683 lncRNA downstream 1489794 23403122 ~ 23404188 (+) True XLOC_011422
TCONS_00022680 mRNA upstream 64983 21760032 ~ 21822840 (+) False XLOC_011390
TCONS_00022682 mRNA upstream 65625 21817382 ~ 21822198 (+) False XLOC_011390
TCONS_00022685 mRNA upstream 65625 21818093 ~ 21822198 (+) True XLOC_011390
TCONS_00022683 mRNA upstream 65627 21817391 ~ 21822196 (+) False XLOC_011390
TCONS_00022684 mRNA upstream 67431 21817859 ~ 21820392 (+) False XLOC_011390
TCONS_00022690 mRNA downstream 5803 21919131 ~ 21959556 (+) True XLOC_011393
TCONS_00022691 mRNA downstream 51144 21964472 ~ 21982835 (+) False XLOC_011394
TCONS_00022692 mRNA downstream 51271 21964599 ~ 21982057 (+) True XLOC_011394
TCONS_00022693 mRNA downstream 159009 22072337 ~ 22091141 (+) False XLOC_011396
TCONS_00022694 mRNA downstream 159010 22072338 ~ 22075194 (+) True XLOC_011396
TCONS_00022679 other upstream 280114 21564607 ~ 21607709 (+) True XLOC_011388
TCONS_00022668 other upstream 1257508 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022664 other upstream 1261004 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other upstream 1266878 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022660 other upstream 1294865 20585328 ~ 20592958 (+) False XLOC_011372
TCONS_00022689 other downstream 4120 21917448 ~ 21917564 (+) True XLOC_011392
TCONS_00022702 other downstream 664302 22577630 ~ 22580193 (+) True XLOC_011401
TCONS_00022706 other downstream 847405 22760733 ~ 22782721 (+) True XLOC_011403
TCONS_00022707 other downstream 913735 22827063 ~ 22827147 (+) True XLOC_011404
TCONS_00022712 other downstream 1310476 23223804 ~ 23223920 (+) True XLOC_011408

Expression Profile

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