RNA id: TCONS_00024681


Basic Information

Item Value
RNA id TCONS_00024681
length 1220
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_011395
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22069932 ~ 22071151 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAATACACACTCTACACCAGTTGGTGGCGGAAAAACACTGTTTTGCTGTTTGTCAACCGAGTAAAATCACAAGAAGAAGAGGATTTGTTTTGGCTGGACGGAGGTGAACATGGCTGATGTGTCGGAGAGGACGTTACAGGTCGCGATAGTCGTCTCGTTTGCGGCTGGTTTTGTCGCCGGTTGGCAGGCAAACAGGATGCGAAGAAAGTTCTTGGACTGGCGGAAAAAGAGGTTGCAGGACAAACTCGCGGAAACACAGAAGAAGCTTGACCTGTCGTGACATACAAGTTATCACGTAACCGACCTGGTAAGACACGTGTCTTTCATAACTATCGTTTTCTATGGAGTAATTTGCTTTCGTTTTACACTATAATCGGTATAACTACTCTTTCATTTCTTTAGTGCCATGTGGTCTTCAATGCTGTGATTTCATGAGCAGAATCAAGTGAATGAACGAGGATCAAGCTGTCAAGTCTTTGGATCAAGTCACAAGCTACAGCAAGGAACACACCTGTCAAAGACTTTAAACACTGAGAAAAACAATGTATTTCTaagattgttttgtttaatgtttgtgcAAGCCATATCCATAATGTTACCACATCTGTGCTCTCTTCTTGTTTGTCGAAGTCgaaataaactgaaatattttGATAACACTGTTGATTACTATTTCTCAGtcatggcttgcagctggaagggtatctgctgctaaaaacatgctggataagttggcatataattccgctgtggcaaccccagggacaaagctgaaaagaaaatggatgaatgttgAGTACTATGAAAGTATTATAATCAATGTGTTAAAAAATTGAGATGTAAAGTTTAAGCAGAAGTAATCTGAATGGAACAATGTTTCTGCATTCACAGAACTGACAGAACATGATTCAATCACAAATGAAAAATCttggtaaaatattaaatatttgcatCTATGtatttgacagcataattgtcaaaatacagtatttaaacattatggctctcagaaataaaggtagagcattttgattattaaaaaaacaatggcACATAACGAAAAAATCCAAATTGGTACCTTAAATTAACTGTACCAGTAACAACATATGTGTGAAACAAACAACATTTATatctttgttaatttatttgtaagCGTTTTATAATACTGAGCGAGAATGAACATcagatgtattttttaataataaacctttgctaaga

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0001501 skeletal system development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024680 lncRNA upstream 366441 21667797 ~ 21703491 (+) True XLOC_011389
TCONS_00024467 lncRNA upstream 979820 21089774 ~ 21090112 (+) True XLOC_011381
TCONS_00024679 lncRNA upstream 1083556 20979252 ~ 20986376 (+) True XLOC_011380
TCONS_00024678 lncRNA upstream 1129101 20938254 ~ 20940831 (+) True XLOC_011379
TCONS_00024466 lncRNA upstream 1201396 20868310 ~ 20868536 (+) True XLOC_011377
TCONS_00022700 lncRNA downstream 487904 22559055 ~ 22572656 (+) False XLOC_011400
TCONS_00024682 lncRNA downstream 487922 22559073 ~ 22572656 (+) True XLOC_011400
TCONS_00022711 lncRNA downstream 1151026 23222177 ~ 23232294 (+) True XLOC_011407
TCONS_00024683 lncRNA downstream 1331971 23403122 ~ 23404188 (+) True XLOC_011422
TCONS_00024684 lncRNA downstream 1338544 23409695 ~ 23410985 (+) True XLOC_011423
TCONS_00022691 mRNA upstream 87097 21964472 ~ 21982835 (+) False XLOC_011394
TCONS_00022692 mRNA upstream 87875 21964599 ~ 21982057 (+) True XLOC_011394
TCONS_00022690 mRNA upstream 110376 21919131 ~ 21959556 (+) True XLOC_011393
TCONS_00022686 mRNA upstream 156604 21887823 ~ 21913328 (+) False XLOC_011391
TCONS_00022687 mRNA upstream 156605 21887859 ~ 21913327 (+) False XLOC_011391
TCONS_00022693 mRNA downstream 1186 22072337 ~ 22091141 (+) False XLOC_011396
TCONS_00022694 mRNA downstream 1187 22072338 ~ 22075194 (+) True XLOC_011396
TCONS_00022695 mRNA downstream 31640 22102791 ~ 22106541 (+) True XLOC_011397
TCONS_00022696 mRNA downstream 240262 22311413 ~ 22501970 (+) False XLOC_011398
TCONS_00022697 mRNA downstream 310064 22381215 ~ 22500849 (+) False XLOC_011398
TCONS_00022689 other upstream 152368 21917448 ~ 21917564 (+) True XLOC_011392
TCONS_00022679 other upstream 462223 21564607 ~ 21607709 (+) True XLOC_011388
TCONS_00022668 other upstream 1439617 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022664 other upstream 1443113 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022666 other upstream 1448987 20616199 ~ 20620945 (+) False XLOC_011374
TCONS_00022702 other downstream 506479 22577630 ~ 22580193 (+) True XLOC_011401
TCONS_00022706 other downstream 689582 22760733 ~ 22782721 (+) True XLOC_011403
TCONS_00022707 other downstream 755912 22827063 ~ 22827147 (+) True XLOC_011404
TCONS_00022712 other downstream 1152653 23223804 ~ 23223920 (+) True XLOC_011408
TCONS_00022717 other downstream 1259020 23330171 ~ 23330311 (+) True XLOC_011412

Expression Profile

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