RNA id: TCONS_00022696


Basic Information

Item Value
RNA id TCONS_00022696
length 4238
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_011398
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22311413 ~ 22501970 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGTTTGCTAACCAGATTGGTTCGCTTTGCTGGCAGCTGTTTTCGAGTAACACAAAATCAATGAATCAAAAATGGTGTCGTGAGTTTTAAGAGCGTCGTGACCGCTAAGTTCATGTTTCAATCTTGTTTACCTGGACTTTGAAGATTTGACTGGCGAGAACAATTTGcaGAAGTTTGCCGCCGAGTAAGGAAAGATGAGGCATCGTGAGACCTCCCCACGCCTCTTCCTGACCTTTCAGTGTCTAGTCCTTTTGGTTATAGTGGTCCACAATGTCCACCATGTGACAGCCGAACATGCCCCAGATCACAGCCAGGATCATAGTTCTCCTGCCAACAAATCTTTGAGCTGTGGGGGCGGCTCAGCCATATGTGCCCCTGGAGTCATCCTTCCAGTGTGGGAACCCCCAAATCCTTCCTTTGGGGACAAGGTAGCCCGGGCCACCGTTTACTTTGTGGCACTGGTATACATGTTTCTGGGGGTTTCGATTATTGCTGATCGCTTCATGGCATCTATCGAGGTCATCACCTCACAGGAAAAGGAGATCACCATTAAGAAACCAAATGGTGAAACGACCACCACAACTGTACGCATCTGGAATGAAACCGTGTCCAACCTTACCCTCATGGCTCTGGGTTCTTCGGCTCCTGAAATTCTGCTGTCGGTCATTGAAGTGTGCGGCCATAACTTTGAAGCTGGTGACCTCGGTCCCTCTACCATCGTCGGCAGTGCAGCTTTCAACATGTTTGTCATTATTGGAATCTGTGTCTATGTGGTGCCCGACGGAGAACATCGCAAAGTGAAACACCTGCGTGTGTTTTTTGTTACTGCTGCTTGGAGCATTTTTGCCTATTTGTGGATGTACCTGATCTTGGCTGTTTTGTCACCTGGTATTGTCCAAGTGTGGGAGGGTCTTCTCACTCTTTTCTTCTTTCCCATTTGCGTGGTCTTCGCTTGGATCGCTGACCGCCGCCTCCTGTTTTACAAGTATGTTTACAAGCGCTACCGAGCTGGCAAGCACCGTGGCATGATTATCGAGACAGAGGGGGACCGGCCTTTACCATCCAAGGTGGATATCGAGATGGATGGGAAAATGCTGAACTCCCATGCCGTGGACTTCTTGGATGGAACTCTGGCTTTGGAACTGGAGGATAAAGACCTGGATGAGGATGAAGCTAGACGTGAAATGGCGAAGATCTTGAAGGAACTGAAGCAGAAACATCCAGATAAAGAGGTGGAGCAGTTGATTGAGCTAGCTAATTACCAGGTGCTCAGCCAGCAGCAGAAGAGCCGTGCATTCTACCGATGCCAGGCAACCCGCTTGATGACCGGAGCAGGTAACATTCTGAAGAAACATGCGGCAGACCAGGCTCGTAAAGCAGTGAGCATGCATGAGGTACGCAGTGACACTGGTGAGAATGACCCAATTTCTAAGATCTTTTTTGACCCTTGCTCATACCAGTGCCTGGAAAACTGTGGCACCGTGGCAGTGAATGTGATCCGTCGTGGAGGCGATCTCAATCAAACCGTGTCCGTGGAATTTCGCACTGAAGATGGAACCGCAAATGCTGGCTCAGACTATGAGTTCACTGAAGGTACCGTTGTTTTCAAGCCTGGTGAGACACAGAAGGAAATCCGAGTTGGAATTATTGACGATGACATCTTTGAAGAAGACGAGAACTTCCTCATCCACCTAAGCAATGTCCGTGTGGTTCATGAGGGTGATGAGCCAGAGACCACTGAAGCCAATCATGTGGAGACCATTGCAACACTCGGTCTGCCCTCCACAGCAACAGTCACCATCTTTGACGATGACCATGCTGGAATCTTCACATTTGAAGAGCCGGTCACCCATGTGAGTGAGAGTGTGGGTGTCATGGAAGTGAAGGTCCTGCGTACGTCTGGTGCCCGTGGGGTGGTGTCAGTGCCATATAAAACCATTGAGGGAACAGCCCGTGGAGGGGGAGAGGACTTTGAAGACAGCCATGGTTTTCTGGAGTTCCAAAACGACGAAATTTTCAAAACGATAAAAGTCAGGATAATTGATGATGAAGAATACGAGAAGAACAAGAGCTTCTTTCTGGAGATCGGAGACCCTCAGCTCGTAGAGACCGATGAGAAGAGAGACGAGGAGAAGGAGGTGGTGAAAGAAGAGGAGGAGCCTCTGACAGGTGAAGAAGAGGAAGAACGCCGCATTGCTGAGATGGGAAAACCAATGCTTGGAGATCACCCCAGAGTAGAGGTTATCATCGAGGAGTCCTATGAATTTAAGAACACCGTTGATAAGCTGATTAAAAAGACAAACTTGGCTCTTCTGGTTGGCACCAACAGCTGGAGGGACCAGTTTATTGAGGCCATTACGGTCAGTGCTGgtgaggatgatgatgatgaagaatgTGGAGAAGAGAAGCTTCCCTCCTGCTTCGATTATGTCATGCATTTCCTAACCGTCTTCTGGAAAGTTCTCTTTGCTTTCGTGCCACCGACCGACTACTGGAACGGTTGGGCGTGTTTCGTGGTGTCAATCATTATGATTGGCGTCCTGACGGCTTTTATCGGTGACCTGGCATCTCATTTCGGCTGCACCATCGGTCTCAAAGACTCAGTCACAGCAGTGGTGTTTGTGGCACTGGGCACTTCAGTACCAGACACATTTGCCAGTAAAGTGGCAGCGATACAGGATCAGTATGCCGATGCATCCATTGGAAACGTGACGGGCAGCAACGCCGTGAACGTGTTCCTGGGCATCGGAGTGGCCTGGTCCATCGCCGCCATCTACCACAACTCAAAGGGCAACGATTTCAGGGTGGAGCCAGGAAACCTGGCCTTCTCCGTCACCCTCTTCACCATCTTCGCCTTCATCTGTGTGGCGGTGCTCATGTACCGGCGCCGGCCCGATATCGGCGGTGAGCTGGGGGGTCCGCGGACTGCGAAAGCGCTGACCACAATGCTCTTCGTCAGCCTTTGGCTCCTCTACATCCTCTTCTCCTCTCTGGAGGCTTACTGCCACATCAAGGGCTTCTAAACATGCActcacatgctcacacacacacacacacacagaactacacagacacacacaaacacattcatgcATTCTGGGGAAAACTAACAAGGACTGCAGAGGAAGGCAACAGCGGTGGATGATGGTTTTCCACAGACCATCTTTTCTCCACACATCATTTgttcatcttcatcttcctccGCTCAACGACTGCATCTGATTGGACCACAGTGTCCAGACATCAAAATCTAGACTATGAAATTGCTACCTTTAACTACTGTAGATGTGCTTTTTTAACCTAAACCGGTGTAAAAGCCACGTGGGGCCGTGGAATCTGTAAGCCCTCTTCATAGTGCCATGGAACTCTGGGTAATGTGGCTGTGTGTTATAGGTTTGTTATGTTGGAGCGAGCGGTACTGTAATTTTGcttgggtgatttttttttttttttttttttcgagcaCACCACTTTGTGTTTACGGTAATGTAATCGAAAGGGGTTAACTCTTCGCACATCATCTTAAACAGCTTTTGTTGTTCTTAAGAGCAGCTGTGTGTGTAACTAGTTCCTGTGAAGGCCAGTTTTTCTGTGCAGTTCAGAAGAGAATAACAATAAGGAGAATGCAGTGCTAATCTCTGCCGGCGCTGAAGCTTTAGAGACTAGAGATGCACTAGTGCAAGACTTTGATTTAAAAGCCTCGATCTGCTGGATGAGCTCTGGTCGAGGAACATCCTGAATTTTCCATTATGATTATAGCGCACTTCGTTATGGATTAGATTATTAATTTATGCAATTGATGGAGGTCTGTGCCGTGAGATAATCCAGCATGTGACATGCTTTGCCAACATCACATTGAAAGTTTACAATTATGACTGTTACTTTCCGTCCAAACAAATAGACATACTATGGGAAAAATGCAAAACCGGTGGCCATACATTCAGACACAATTTACAGTCTTACACATGCAAGCATGTAAAATTGGTAGTCTTTTGCTTGATAAAGAATACACTGAGTCACTCATCTACGTGGAGTTTACGAGGGCGCGCTTTCCCTCCAAACCTGCTGAGATTGCTTCTTTGTACTTTACAGATTCGCTGCATTCAGAGCTGTATGGTAAATCTCGTAGAGTAGTCACGGTTTTAGACATAGCTTGATTTTAAAAGCAAAAGTTGTAGAACTAACCTGAATTTGATTCTAATTATATTTAGGATAGCATGGTTTAACGCAAACAAAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0098703 calcium ion import across plasma membrane biological_process
GO:0030001 metal ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0042383 sarcolemma cellular_component
GO:0030424 axon cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0005432 calcium molecular_function
GO:0015491 cation molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060110-3 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium ion import across plasma membrane and sodium ion transmembrane transport. Predicted to act upstream of or within cell communication; metal ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon; postsynapse; and sarcolemma. Predicted to be integral component of plasma membrane. Is expressed in several structures, including blood; eye; liver; neural tube; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human SLC8A1 (solute carrier family 8 member A1).

Ensembl:

ensembl_id ENSDART00000151929

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024681 lncRNA upstream 240262 22069932 ~ 22071151 (+) True XLOC_011395
TCONS_00024680 lncRNA upstream 607922 21667797 ~ 21703491 (+) True XLOC_011389
TCONS_00024467 lncRNA upstream 1221301 21089774 ~ 21090112 (+) True XLOC_011381
TCONS_00024679 lncRNA upstream 1325037 20979252 ~ 20986376 (+) True XLOC_011380
TCONS_00024678 lncRNA upstream 1370582 20938254 ~ 20940831 (+) True XLOC_011379
TCONS_00022700 lncRNA downstream 57085 22559055 ~ 22572656 (+) False XLOC_011400
TCONS_00024682 lncRNA downstream 57103 22559073 ~ 22572656 (+) True XLOC_011400
TCONS_00022711 lncRNA downstream 720207 23222177 ~ 23232294 (+) True XLOC_011407
TCONS_00024683 lncRNA downstream 901152 23403122 ~ 23404188 (+) True XLOC_011422
TCONS_00024684 lncRNA downstream 907725 23409695 ~ 23410985 (+) True XLOC_011423
TCONS_00022695 mRNA upstream 204872 22102791 ~ 22106541 (+) True XLOC_011397
TCONS_00022693 mRNA upstream 220272 22072337 ~ 22091141 (+) False XLOC_011396
TCONS_00022694 mRNA upstream 236219 22072338 ~ 22075194 (+) True XLOC_011396
TCONS_00022691 mRNA upstream 328578 21964472 ~ 21982835 (+) False XLOC_011394
TCONS_00022692 mRNA upstream 329356 21964599 ~ 21982057 (+) True XLOC_011394
TCONS_00022699 mRNA downstream 28850 22530820 ~ 22542210 (+) True XLOC_011399
TCONS_00022701 mRNA downstream 75502 22577472 ~ 22585596 (+) False XLOC_011401
TCONS_00022703 mRNA downstream 85386 22587356 ~ 22741729 (+) True XLOC_011402
TCONS_00022704 mRNA downstream 258156 22760126 ~ 22947117 (+) False XLOC_011403
TCONS_00022705 mRNA downstream 258239 22760209 ~ 22810625 (+) False XLOC_011403
TCONS_00022689 other upstream 393849 21917448 ~ 21917564 (+) True XLOC_011392
TCONS_00022679 other upstream 703704 21564607 ~ 21607709 (+) True XLOC_011388
TCONS_00022668 other upstream 1681098 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022664 other upstream 1684594 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022702 other downstream 75660 22577630 ~ 22580193 (+) True XLOC_011401
TCONS_00022706 other downstream 258763 22760733 ~ 22782721 (+) True XLOC_011403
TCONS_00022707 other downstream 325093 22827063 ~ 22827147 (+) True XLOC_011404
TCONS_00022712 other downstream 721834 23223804 ~ 23223920 (+) True XLOC_011408
TCONS_00022717 other downstream 828201 23330171 ~ 23330311 (+) True XLOC_011412

Expression Profile

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