RNA id: TCONS_00022706


Basic Information

Item Value
RNA id TCONS_00022706
length 667
RNA type processed_transcript
GC content 0.54
exon number 5
gene id XLOC_011403
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22760126 ~ 22947117 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACTAACCGGGCGCGATTTGACAGCAGAACTTCTGTGTTTGATAACTGACCGTATGGAGGGTCAGTGTGGGCATCGGACATCatgaggacagacagacagacgcgtgtttatctattttgttcaTGTTGAGatgcaGGTTCATTGCTGCAGTTGGTATATGACGGAGATTTTGAGGCCGTCCTCTTCAGCTCTGCGGTGCAGGGGCTTCTGGGAGTTTGTCCTGAAGAGGGTGACAGCATTGAGGCCTATCTGGAGAGACAGGTGCTGTCTTACCTGAGTGATGCCACCGAAGAGCAGAGGAGCCACAGGGAAGTTGCTCTGTTGGCGGTGGCAGTGGGGTGTCTGAACCTTTTCGCCCAGAGTAACTGGACCGGCCCACCAGTTGAGCTCCATGTCTCTGATGTTCTTCCTGAAGCCCTGCTCCAGAACTTTTCTCAGCCTGCGGCCCTGAGTACAGCTCTGTTGTCCAGTCTTCAGCTGGATGGAGAGTCTGTGTACAGTCTGGTCTCCAACCCTCTCCTGCTGCTGCTGACCAGAGTCATCTTCGTCAACTGCGCCGCCAAACTGGAGAGCCTTCAGCTGCTGCCCTGGTGGACGCTTCGATATGTCGCTCTCCATCAGCAGATACTGGAGGAAAGATCCCCACAGCTCCTCAACCTGATGCT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030102-1 Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and pectoral fin bud. Orthologous to human TTC27 (tetratricopeptide repeat domain 27).

Ensembl:

ensembl_id ENSDART00000136384

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022700 lncRNA upstream 188077 22559055 ~ 22572656 (+) False XLOC_011400
TCONS_00024682 lncRNA upstream 188077 22559073 ~ 22572656 (+) True XLOC_011400
TCONS_00024681 lncRNA upstream 689582 22069932 ~ 22071151 (+) True XLOC_011395
TCONS_00024680 lncRNA upstream 1057242 21667797 ~ 21703491 (+) True XLOC_011389
TCONS_00024467 lncRNA upstream 1670621 21089774 ~ 21090112 (+) True XLOC_011381
TCONS_00022711 lncRNA downstream 439456 23222177 ~ 23232294 (+) True XLOC_011407
TCONS_00024683 lncRNA downstream 620401 23403122 ~ 23404188 (+) True XLOC_011422
TCONS_00024684 lncRNA downstream 626974 23409695 ~ 23410985 (+) True XLOC_011423
TCONS_00022731 lncRNA downstream 688399 23471120 ~ 23473164 (+) False XLOC_011425
TCONS_00022732 lncRNA downstream 698330 23481051 ~ 23482621 (+) False XLOC_011425
TCONS_00022703 mRNA upstream 19004 22587356 ~ 22741729 (+) True XLOC_011402
TCONS_00022701 mRNA upstream 175137 22577472 ~ 22585596 (+) False XLOC_011401
TCONS_00022699 mRNA upstream 218523 22530820 ~ 22542210 (+) True XLOC_011399
TCONS_00022696 mRNA upstream 258763 22311413 ~ 22501970 (+) False XLOC_011398
TCONS_00022697 mRNA upstream 259884 22381215 ~ 22500849 (+) False XLOC_011398
TCONS_00022708 mRNA downstream 173706 22956427 ~ 23095090 (+) False XLOC_011405
TCONS_00022709 mRNA downstream 174095 22956816 ~ 23116523 (+) True XLOC_011405
TCONS_00022710 mRNA downstream 364255 23146976 ~ 23201215 (+) True XLOC_011406
TCONS_00022713 mRNA downstream 472644 23255365 ~ 23262007 (+) True XLOC_011409
TCONS_00022714 mRNA downstream 516207 23298928 ~ 23302321 (+) False XLOC_011410
TCONS_00022702 other upstream 180540 22577630 ~ 22580193 (+) True XLOC_011401
TCONS_00022689 other upstream 843169 21917448 ~ 21917564 (+) True XLOC_011392
TCONS_00022679 other upstream 1153024 21564607 ~ 21607709 (+) True XLOC_011388
TCONS_00022668 other upstream 2130418 20625773 ~ 20630315 (+) True XLOC_011374
TCONS_00022664 other upstream 2133914 20616016 ~ 20626819 (+) False XLOC_011374
TCONS_00022707 other downstream 44342 22827063 ~ 22827147 (+) True XLOC_011404
TCONS_00022712 other downstream 441083 23223804 ~ 23223920 (+) True XLOC_011408
TCONS_00022717 other downstream 547450 23330171 ~ 23330311 (+) True XLOC_011412
TCONS_00022718 other downstream 548698 23331419 ~ 23331559 (+) True XLOC_011413
TCONS_00022719 other downstream 552880 23335601 ~ 23335741 (+) True XLOC_011414

Expression Profile

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