RNA id: TCONS_00022728


Basic Information

Item Value
RNA id TCONS_00022728
length 927
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_011424
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 23462972 ~ 23472265 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aTGGGGCTGCTGCGTGTTGAAGAGCTGGTCACCGGGAAGAGAGGCGAGGGAAGGGTGGGAGAAAGTGCTTGTGCAGAGGTGTTTGCTGCTGGAGAATATGAGACCAGCATCATCCAGGAGAAGCAGGATGGCATTCACACACAACAGGACCTGAATGACACCACCCAGAATGACACCAAACCAAGTGAACTGAAGCCAAAACTTAATgttgacCGGTCCGGACATCTAAAACTAGAAACTGTGGAAGACCTCTTCAATATTTTGGAACTGAGAAAGAGGAGAAAGGAAAGGAAGATTCAGATGTTAAAGAAAGAGCCAGAGCCTGATATCTTGCCTGAAACAGTGGACCAGGGGTTGTTTCTCAAAGCTGTCACAGAAAATAAACTGCCTGTAGTGGAGAAATATTTAGTGGATGGTGGAGACCCCAATGCCTGTGATCATtttAAGCGCTCAGCTCTGCATAAAGCCAGTGCACAAGGTCACACAGAGATCATGCAGAAGCTCCTGGAGAGTGGAGCATCCATGGATCAGAAAGATAAGCTGGATGCCACAGCTGTGCACTGGGCCTGCAGAGGTGGAAGCCTGCCTGCCCTGGAGCTGCTTCTCAATAAAGGAGCCAAATTCAACTCCAGAGACAAGCTATCCAGCACTCCACTCCATGTTGCAGTTCGGACGGGACATTATGAATGTGCTGAGCATCTCATTCACTGTGGAGCTGATGTAAATGCTAAAGACAGGgACGGAGACACACCAATGCACGATGCAGTGAGAATAAACAGATTTAAAATGATTAGACTGCTGATGATGTACGGGGCTAGTCTAAATGCCAAAAACAATGATGGAAAGACGCCAATGGAGACTCTGCTGTCTTGGCAAAAAGGTGTAAAAAACATTCTAAATAACCTTAATGAATGTGAATCCTCCTAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100405-1 Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in heart; myotome; skeletal muscle; and somite. Human ortholog(s) of this gene implicated in congenital structural myopathy; dilated cardiomyopathy; hypertrophic cardiomyopathy; nemaline myopathy; and spinal muscular atrophy. Orthologous to human ANKRD1 (ankyrin repeat domain 1).

Ensembl:

ensembl_id ENSDART00000192168

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024684 lncRNA upstream 52137 23409695 ~ 23410985 (+) True XLOC_011423
TCONS_00024683 lncRNA upstream 58934 23403122 ~ 23404188 (+) True XLOC_011422
TCONS_00022711 lncRNA upstream 230828 23222177 ~ 23232294 (+) True XLOC_011407
TCONS_00022700 lncRNA upstream 890466 22559055 ~ 22572656 (+) False XLOC_011400
TCONS_00022732 lncRNA downstream 8786 23481051 ~ 23482621 (+) False XLOC_011425
TCONS_00024685 lncRNA downstream 257481 23729746 ~ 23746343 (+) False XLOC_011430
TCONS_00024687 lncRNA downstream 348021 23820286 ~ 23824866 (+) False XLOC_011433
TCONS_00024686 lncRNA downstream 348021 23820286 ~ 23824866 (+) True XLOC_011433
TCONS_00024468 lncRNA downstream 433536 23905801 ~ 23919315 (+) True XLOC_011434
TCONS_00022716 mRNA upstream 148944 23311377 ~ 23314178 (+) True XLOC_011411
TCONS_00022714 mRNA upstream 160801 23298928 ~ 23302321 (+) False XLOC_011410
TCONS_00022715 mRNA upstream 160807 23300827 ~ 23302315 (+) True XLOC_011410
TCONS_00022713 mRNA upstream 201115 23255365 ~ 23262007 (+) True XLOC_011409
TCONS_00022710 mRNA upstream 261907 23146976 ~ 23201215 (+) True XLOC_011406
TCONS_00022733 mRNA downstream 22433 23494698 ~ 23508239 (+) True XLOC_011425
TCONS_00022734 mRNA downstream 76852 23549117 ~ 23552068 (+) True XLOC_011426
TCONS_00022735 mRNA downstream 82667 23554932 ~ 23565897 (+) False XLOC_011427
TCONS_00022736 mRNA downstream 84499 23556764 ~ 23575465 (+) False XLOC_011427
TCONS_00022739 mRNA downstream 106051 23578316 ~ 23596969 (+) False XLOC_011429
TCONS_00022726 other upstream 75176 23387806 ~ 23387946 (+) True XLOC_011421
TCONS_00022725 other upstream 79383 23383599 ~ 23383739 (+) True XLOC_011420
TCONS_00022724 other upstream 106632 23356350 ~ 23356490 (+) True XLOC_011419
TCONS_00022723 other upstream 112562 23350420 ~ 23350560 (+) True XLOC_011418
TCONS_00022722 other upstream 114653 23348329 ~ 23348469 (+) True XLOC_011417
TCONS_00022737 other downstream 84531 23556796 ~ 23563803 (+) True XLOC_011427
TCONS_00022738 other downstream 100865 23573130 ~ 23573215 (+) True XLOC_011428
TCONS_00022772 other downstream 967267 24439532 ~ 24444402 (+) True XLOC_011444
TCONS_00022785 other downstream 1143442 24615707 ~ 24615794 (+) True XLOC_011450
TCONS_00022788 other downstream 1145199 24617464 ~ 24617542 (+) True XLOC_011451

Expression Profile

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