RNA id: TCONS_00022957


Basic Information

Item Value
RNA id TCONS_00022957
length 7491
RNA type mRNA
GC content 0.48
exon number 31
gene id XLOC_011523
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30369107 ~ 30418016 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTCACTAAAAATACTCTTAGTTTTACCATAGTCACCATACTCATGAAGCACATTTGAGTATGCTATAACGTTAcagaaattattaaaacaacTTACCTGAAGTTTTAAACACCTGACTGTTTTCAACACTTATGTCCTAAATCCCGCTCAACAAGCGGTGACGTTGGGCGATACCATCTCCACAGGGACTTGAGGGAGAGAATGAAGGGTCGACACCATCACAGAGAGAGGAAGGGGTGACCAGATCGCAGTAAGAAATTATGGCATGCGGCCAGCGGCATTTTTACGGAGTCTGACCGCCAGTGACCAGCGGAGACGCGGCTCAATCGCGCATCTCGGAGATATGTACATGAACAGTGCGATCCTTGCCGAATTCCCTTGGAATATCTGAGTGATTTCACAATTAACTAACGGTCATGGGGAATTCCTATACAGGACACCTTCAGAGTACTCGGTTTGAGGAAGTGTTGCACAACTCCATAGAGGCGTCGCTGCGCTCCAACACAGTGGTTCCCCGACCAGTGTTCTCTCAGCTGTACCTGGAGGCAGAGCAAAGACCTTATTCTCATGAGGGTCGAGTagatgaggatgaagatgaagaggAAGGCTCGGATTCAAACAGCCCTCCAATCCCATATCAGATGAAATCTCCACCAGAGGGTTCATGTACTACAGATGGGTTCTGTCAGGCGGGTAAAGACCTTCGGCTGTCATCCATGGCCGCAGAGAGTTTGGAGGTTCCGCCTGGGTTTCTGCTCGTCGGAGCCAAATCTCCCAGCGTGCCTGATCACATTCTGGTGTGTGCGGTGGACTTGCGCTTTCTCCCCGATGAATGTGGACGTAATGCACTTTTAGGTTTCTCAGGGAACTGCATGGGCTGTGGAGAGAAGGGCTTCCGCTACTTCACAGAGTTTGCCAACCACATCAACCTGAAGCTCAGCACACAGCCTAAGAAGCAGAAGCACTTAAAGTACCACCTGCTCCGAAATGCACAGGGCATTCTGGTCAAGGGACCACCAATCTGCTGGAAAGGAATAGACAGCCGAATGAGAAATGCAGTCAGTAATATAACTGCCGGACCAGAGGAGCAATCAGCACATGGACCCAATGACCTGCTCTCCAATTCAGGGCACATGCCTTTAAACACAATTAACCACACagATCTGAACACCCAACACCACACATCTGACGGTTCCCCTCCCATTACTAATGGCAGTCATGTTCCAGCTCAACCTCTACCACAGCCTGGAATAGTTGCCACTGGCCCTGGAAGGCCCACAGTAATAGGTTCCATGGCAAATTCTGGGCCCCCCAAGAAGAGACACAAGGGATGGTCTCCAGAATCGTCTGCTCCTACAGAAGTGACCTCCAGACCTGCTCCCAACAGCACAAGCAATGGCACTAAATCAGCTGACACTGGGGCATCTGGGTGTTTTTCTGTGGGGTCCTCTCCGCCCCTTGCTATGGGTGAGTCTGTCACAGTGCCTGATCACCTGCTTCAGACTTGTGGACTACGACCGGtcatttttaaagGGCACGGGACACTGCCTCATCTATCTGGGAACCTTGAGGATGTGCTGGTGAGTGGCCTGCTTGAGAAATGCTATCGCAGTTCCCAGAACCTCCCACGTGTCTATGAGCAGTATGGCACCGCTCCTATCCAGCCCATCTCCACTGAGATGCTGATCCTGCTCACTGTCTACTATCTAGTGCAGCTTGCACCTGACCAGGCTCCTGTGATGGAAGACTTGGAGCAGATCTTCATGCGCTCCTGGCGTGAGTCTCACCTGACAGAGATCCGGCAGTACCAGCAAACACATACACAGTTTCCACCTCCTCTGCCCTGCCTCGCGCAGCCCCTCACTCCCTCTCAGCTGCCCTGGCTTGCCAAACTGGCCACCAGCTCATGTGGAGAAGGAGTTCTGGTGCTGGACACTGCACTCTCTCTGGCAGAGGCGCTGGAGGACACCTTTCACAGGCTGGTGGAGGGAAGATTGAGCCACACCAACTATGTGGTGATCATCTGCATGAACAGGAGCCAGGAAATAGAGTCATGTGTGGTGGTGACAGGGAAGCACCAGACTCGTGCTCTAGCCGAGAGTCTTCTTTCTCCCAGTGATTGTTTGAGAGAGATTGTTCATGAACTGTCTTCTGGGATGGCAGCAGAGCTGGGGTCTTATTTCAGTTCTTTAGGTCCAGACGGAGATGTGGAAGCTTTGCTGGAGAAAGCCAGCCCTGAAAACACCTCACAGTATTCTGCTATAGAACCATCTGGAGACAGTCCTAAACCTAAGTGCACTGAATACTTTGTAGAGTGGCATGAGATTCGGCCCATTCAACTCGCCTTGGCACGGAAGCTGCTCTCACATGTTTGTGCCATCGCTGATTCCAGCACACAGAACCTGGACCTCGGTTCCTTTGACAAGGTGGACTTTTTAATCTGCGTTCCACCCTCAGAGGTCACCTTTCATCAAGTCGTCCTCCACCTGTGGAACTCAGGAGTGTTTAGAGAGTTAGGACTCGACCAAGACTGCTTGTCTCTGAAGGAGGCTGAGCAGTATGTGGTACAGCTGAACCAGAGTGCAGTGGGAAAGATCAACAACCTCATTCAGAAGTCAAAGATGAACCCCTACACACTCTTTATACTGGTGCATGATCACGCACACTGGGATGTCAGCAGTGGGCAGTGCAGTGGAGGAGACTCTAGTGTAGGACTAGTGGACAGTCTGCTGAACTGCAGGCAGATTCGAGACGCTGCCAATATCCTGACGCTCCATGTGACTTCATTCCCCTTCACCCTGCAGACTCAGTACACCCGCATCAGCCCATACAACGAGATCCACTGGCCATCAGGATTCAATAATGATGTAGATCTTTATCATGAGAAGACAAAGTACTTTGGTGTGTCCGAGCTGCTAGAAACGACCCGCTCTGGAAGTGGCCTTCCTCTGCTACGATATGACAGTTCCTTTGAGAGTATGGCTGCTGCTCTGGAGGAGAGGTTCCCAAAACTACACAGCGCTGTGATTCGCACTCATGTCCTAATCCAGCATTACTCTCTGGCCCTAATGGCAACAGCAGGCGGCCAGGCTTTACAGGCTCTGCAGAAGCACATCTCAGTGGAGACGCTGGAGATGGTGCAGTGTCTCCTCAACACCTCTCAGCACTGTCCTAGCCGTCATGGTCACATGCTGCTCCTGAGGATCCCGTCACCGGCTCTTGCTGCCTTAGCACATCAGCGCCTCTGCCATGTGCGCAACAGACTCGGCCTTCACAAGCAGTTTGAGGTCATACTGGGGGATCCATGCTCCACTCTTACCGTAGGAAAACACTTTCTGGATCAACTGAGGGTATGGCTAAAGATCTTGGATCCAGACTGGGCTCCTCGCACGTATCTAGAGCTGGAGGCTTTACCCTGTATTCTCATCTTAACTGGCATGGATCCACAGGGAGAATCTTTACCTAGATCTCTGAAGTATTGTGACCTGCGTGTTATCAGCTGCTGGTCTCTGCAGCGCACCACCCTGGAGCAGGAGCTGGGACTAGCTGCCTACATACTCAAGACAAAACAAGATGGCCAGCATGGGCCGAACGCACCCAGTGACCTCTCTGAGAGTGACCCTGAAAAACTCAGCAGCACTGACAACGAGGAGGAAGAGGTTGTGGTGGATGTAAACAGCGATCTTCCTAAGCTGGGTAACCAGGCCTCCCCAGCTGCCTCTCAGCGCCCACAGCCTGACTGTAATCCTCTGGATTCAGAAAAGCAGCCCAAGCAGAGGCGACAGTCCAAATCCACCTCGTCTGGCTCTTCGTCCACACGAGCCTCTCCTCTTCGGCAGAGCTGCTCCTGGGCACGTAATCTCAGCCGTCCGCCTGTGGTGCTGCTTCCTAAAACCGTCTACGACCTTATCACCACTGTGGATTCCAGTGGTCTGCCCAAGTCTACTTCTTTCCTCCCTCACCCTTCAGTGGAGTGGGTCAGCTCCTTTAGACCCCTGCTCAGCAAGATGATGACCTGCACTGAACAGTCACTGTACTATCGCCAATGGACGATCCCCAAACCCCATCACATGGACAGCACTAACCGAGCTGAAGGACGAACTGATAACTTCCACCCACGAAAGTTGTTGCTGAGTGGGCCCCCACAGGTGGGGAAGACAGGGGCATATCTGCAGTTCCTGGGGATTCTGTCCCGCATGCTGATTAGGCTGATGGAGGTGGACATCTATGATGAAGAAGACATCAACTGCAACTGTGAGACAGATTTGGTGCGATATCATCAACCTGTTGCATCATGCCCCAACACCGAAACTGTAAGAGGGATGCCTTTCGATTACACCATCCATGACCCTAAATACGAGGATATTAGCACTATATACTCACCAGACTTCACTCCGAATTCAGATGATGGAAACTCCAGGCGGCAGGAAGATGTTTATTTACGCAGACGAACAACACGGATCAAACTTTCTAAATACGCAGCATACAACACATATCATCACTGTGAACAGTGTCACCAGTATATGGGTTTCAATCCACAGTATCAGCTGTACGAGTCCACCCTTCATGCCTTTACCTTCTCTCACCTTCTACTGGGAGAGGAAATCCAGCTCTACTTCATCATCCCCAAATCTAAAGAGCACCACTTCTCTTTCAGCCAATCAGGAGGCCAGTTAGAGAGCATGAGACTGCCACTTACTTCTGACTGGAGTCCAGATGCTATCAAAAGTCCAATTTTCACACCTACAACTGGTCGGCACGAACACGGCCTGTTTAATCTTTATCATGCCATGGAAGGAGCCACCCATCTGCACATTCTAGTGATTAAAGAGTATGAGATGGCCGTATACAAGAAATACTGGCCCAACCATATAATGCTTGTCCTGCCCACTGTCTTCAATGGAGCAGGAATAGGAGCAGCTCACTTTCTGATTAAAGAGCTCTCCTATCATAACCTGGAATTAGAGCGAAGTAGGCGAGTAGAGCATGGCAATCGACCACAAGACGTCTGGCCCTTCATCATCCTCGCAGATGATTCCTGTGTCATGTGGAACAGTGTTGATGTTGATCCAAAAAGCGGCACCACCGAGACCGAAAGAAATGTGTCCTTGAAACAGGTTCTTCAGCACATGGAGTCTTCTCCAGATATCACTCAGTATGGTTTATGCGGCATGAGGAAGTGGTCCAGTCGTGGAGGAGTTGCTGGATGCCAAAAAGAGCCCTTCTCACGTGGACACCTCCACGACTTCCTCTTACTTAACGTGGACCTCACACAGAATGTACAGTACAACCAGAACCGTTTCACATGTGATGATGTGGACTTCAACCTGCGAGTACACAGTGCGGGACTCCTCATCTGCAGGTTCAACAACTTCAGTGTGATGAAGAAGCAGATTGCCATTGGTGGATATGGCACCTTCATCATCAAGACCAAGATGACAGACGTCCCCACCACAATCCAGCCATCTCAATACATCTGTGCTCCAGACAGCAAGCATGTGTTTTTGGCCACACCAGCTCAACTACTGCTGGAGAAATACCTTCAGCACACCAGCCATCGCCTCTTCCCCCTTAGCGCCCAGAACTACAGCCACCCCATCCTCTCTGTGGACTGCTACTTAAACCTTGGACCAGAGGTGACAGTTTGCTTTGTCAGCTCCAGACCTCACTCCATCAACTTTAGCACTACCGGACTGCTCTTTAGTGGCCTTCTCTTATACTTCTGTGACTCCTTTGTGACTCCTGGATTCCTTAAAAAGTTCCAGTTCCTGAAAGGTAAAGACACAGGAGATAAACTAAAGCTCCGACTTTCTGCTTGCCTGTGTAACACTGTGATAAACACTGGAAAACCCTCTGTTTATTTGCTCTTTGCTACTGTAGGAGCGACTCTGTGTGTGATCTGTCCTAACCGGAGCTCACTGCGCCAGACTGTGGTGCGGCTGGAACTGGAGGACGAATGGCGGTTTCGTCTAAGCGATGAGTTTCAGACCGCAAATGCCAAAGAGGACCATCCTCTCTTTTTCCTCACAGGAAAACACATATGACCGTCAAAGCTCAAAGACTCCATCACTTTGGTCTTATCAAGTGTGCTGTCTGTATATAACATTATCTCTGTACATAATGCACAGGAAGTGCTGTAAATATTCTGCTTGCttggtgttgttttttttaagctcATACAGGAAAACCTGCATATTAACACACTCAAAACAGGATTAACtccaattattttattattgtttaaaatgtatttatttactgtgtCCTTTCTATGTTTTTATCTTTCTATGTTTTATTGTTTGacgttttaattgtttttctgtCACAGTCGGATCTTTTAACGTCAGCTCGATGCAGCTATGAAGTGTTTAAAAACTGATTGAAGTATTTTGTAGAAAAGAGTATTTTTGTAGCAGTATTGGCGTGTTCTGTGATGCGTGTGGAGAGCGTAATGTTATTAAAGTACTTATACATTTCAGATCTCTGCTTgttattgattttgttttgctgtaCCCCTCTATGAACACTAGAGGGCGAAATAATATCTATTTCTCTTTCTAACCCTCACACACTCACTGTTTTTGAGAGTTAATATATGATGCAAACTATAAAGGCCTAAAGATATTTCttccaaataaatattttgtaatttagaaggtttttttttctgacaataaatacaaaaaatgtgaTAATGCACCCtcattttttgtgtgtacatgtttttgtgacatctCAGTTCAAAAATCTGTATAACTACATGTGTATGACACATATTAAAAGAAGGTGGTggattatgaggacattgctgatgttCTCATTTCTCAAAGAGCTTATAAATTATACAGAATGACTTCAGAAAGTAAAACAGTTCCTGTAAGAGTTGAGTTTAGGGATAGGGTTGGGTGTAGGGCAATAGAAAATGCAGCTTGTACactaaactcaccggccactttattaggtacaccttacttgtactaGGTACATTCTGAGTAGCATTAGTACTGCACatttatgatgtgaatctcccattcaccacataccaaaggtgctctactgagttgggatctggtgactgtggaggccatttgagtacagtaaactctttgtcatgttcaaaaatatCCCccccaccattacaccaccaccaccagcctgaaccattttGATCACGTCTACTTGCCTAAacacattgagttgctgccatgtgatcagaaaggggatttaaaatttgcattatcgagcagttggacaggtgtacctaataaaatggccggtaaGCGTCTCCACAATTCtcaaaaacaaacctgtgtgtgaGCACGTGTGAGCTTAAAAAATGTACTGATACAATTATTAACAGAATAAATGTTCCTTTTGACGTgaacattttgcattattttacattaataatgcatTCAGGTTACTGTAAAATATGCATTTGTTGTATATCATTCCAGTTTAAGAAACAATAAAAAGTGTTATAAACAAG

Function

GO:

id name namespace
GO:0021983 pituitary gland development biological_process
GO:0060026 convergent extension biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-332 Acts upstream of or within convergent extension; pituitary gland development; and somite development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; gonad; midbrain neural keel; neural tube; and paraxial mesoderm. Orthologous to human GREB1 (growth regulating estrogen receptor binding 1).

Ensembl:

ensembl_id ENSDART00000182286

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022954 lncRNA upstream 640364 29723351 ~ 29728743 (+) True XLOC_011521
TCONS_00024703 lncRNA upstream 1291265 29021960 ~ 29077842 (+) False XLOC_011517
TCONS_00024470 lncRNA upstream 1331325 29021981 ~ 29037782 (+) True XLOC_011517
TCONS_00024702 lncRNA upstream 1536395 28822373 ~ 28832712 (+) False XLOC_011515
TCONS_00022971 lncRNA downstream 169479 30587495 ~ 30589136 (+) True XLOC_011526
TCONS_00024471 lncRNA downstream 326713 30744729 ~ 30745172 (+) True XLOC_011529
TCONS_00022980 lncRNA downstream 430422 30848438 ~ 30849810 (+) True XLOC_011531
TCONS_00022982 lncRNA downstream 707139 31125155 ~ 31127838 (+) False XLOC_011533
TCONS_00022985 lncRNA downstream 707214 31125230 ~ 31127838 (+) False XLOC_011533
TCONS_00022955 mRNA upstream 94792 30205258 ~ 30274315 (+) False XLOC_011522
TCONS_00022956 mRNA upstream 132372 30205406 ~ 30236735 (+) True XLOC_011522
TCONS_00022949 mRNA upstream 998793 29345606 ~ 29370314 (+) False XLOC_011520
TCONS_00022953 mRNA upstream 999543 29348013 ~ 29369564 (+) False XLOC_011520
TCONS_00022952 mRNA upstream 999543 29348013 ~ 29369564 (+) False XLOC_011520
TCONS_00022961 mRNA downstream 24502 30442518 ~ 30470271 (+) False XLOC_011524
TCONS_00022962 mRNA downstream 30436 30448452 ~ 30458637 (+) False XLOC_011524
TCONS_00022964 mRNA downstream 32147 30450163 ~ 30468606 (+) True XLOC_011524
TCONS_00022966 mRNA downstream 104748 30522764 ~ 30589141 (+) False XLOC_011526
TCONS_00022967 mRNA downstream 104748 30522764 ~ 30589694 (+) False XLOC_011526
TCONS_00022936 other upstream 1667824 28670177 ~ 28701283 (+) False XLOC_011513
TCONS_00022941 other upstream 1675089 28691129 ~ 28694018 (+) False XLOC_011513
TCONS_00022911 other upstream 2908324 27456956 ~ 27460783 (+) False XLOC_011502
TCONS_00022906 other upstream 2966764 27402261 ~ 27402343 (+) True XLOC_011500
TCONS_00022877 other upstream 3749150 26619840 ~ 26619957 (+) True XLOC_011488
TCONS_00022963 other downstream 30516 30448532 ~ 30460493 (+) False XLOC_011524
TCONS_00022965 other downstream 78708 30496724 ~ 30496840 (+) True XLOC_011525
TCONS_00022973 other downstream 180357 30598373 ~ 30603607 (+) True XLOC_011527
TCONS_00022977 other downstream 378857 30796873 ~ 30797919 (+) True XLOC_011530
TCONS_00023004 other downstream 1651242 32069258 ~ 32069372 (+) True XLOC_011547

Expression Profile

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