Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00023007 |
| length | 894 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_011549 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 32158951 ~ 32334107 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004222 | metalloendopeptidase activity | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| id | description |
|---|---|
| ko01002 | Peptidases and inhibitors |
| ensembl_id | ENSDART00000157347 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024704 | lncRNA | upstream | 193646 | 32102906 ~ 32112037 (+) | True | XLOC_011548 |
| TCONS_00022995 | lncRNA | upstream | 682742 | 31621814 ~ 31622941 (+) | False | XLOC_011542 |
| TCONS_00024472 | lncRNA | upstream | 734194 | 31571013 ~ 31571489 (+) | True | XLOC_011538 |
| TCONS_00022985 | lncRNA | upstream | 1177845 | 31125230 ~ 31127838 (+) | False | XLOC_011533 |
| TCONS_00024705 | lncRNA | downstream | 40189 | 32365108 ~ 32446658 (+) | False | XLOC_011552 |
| TCONS_00024706 | lncRNA | downstream | 40280 | 32365199 ~ 32422504 (+) | False | XLOC_011552 |
| TCONS_00023010 | lncRNA | downstream | 40337 | 32365256 ~ 32395041 (+) | False | XLOC_011552 |
| TCONS_00024707 | lncRNA | downstream | 45346 | 32370265 ~ 32446658 (+) | False | XLOC_011552 |
| TCONS_00024708 | lncRNA | downstream | 97680 | 32422599 ~ 32423550 (+) | True | XLOC_011553 |
| TCONS_00023003 | mRNA | upstream | 298451 | 31914877 ~ 32007232 (+) | True | XLOC_011546 |
| TCONS_00023001 | mRNA | upstream | 481713 | 31820401 ~ 31823970 (+) | False | XLOC_011545 |
| TCONS_00023002 | mRNA | upstream | 485031 | 31820533 ~ 31820652 (+) | True | XLOC_011545 |
| TCONS_00023000 | mRNA | upstream | 507418 | 31742923 ~ 31798265 (+) | True | XLOC_011544 |
| TCONS_00022999 | mRNA | upstream | 508986 | 31739429 ~ 31796697 (+) | False | XLOC_011544 |
| TCONS_00023008 | mRNA | downstream | 18202 | 32343121 ~ 32360489 (+) | True | XLOC_011550 |
| TCONS_00023009 | mRNA | downstream | 35754 | 32360673 ~ 32364957 (+) | True | XLOC_011551 |
| TCONS_00023011 | mRNA | downstream | 49957 | 32374876 ~ 32527320 (+) | False | XLOC_011552 |
| TCONS_00023013 | mRNA | downstream | 175468 | 32500387 ~ 32525649 (+) | True | XLOC_011552 |
| TCONS_00023014 | mRNA | downstream | 206935 | 32531854 ~ 32551256 (+) | True | XLOC_011556 |
| TCONS_00023004 | other | upstream | 236311 | 32069258 ~ 32069372 (+) | True | XLOC_011547 |
| TCONS_00022977 | other | upstream | 1507764 | 30796873 ~ 30797919 (+) | True | XLOC_011530 |
| TCONS_00022973 | other | upstream | 1702076 | 30598373 ~ 30603607 (+) | True | XLOC_011527 |
| TCONS_00022965 | other | upstream | 1808843 | 30496724 ~ 30496840 (+) | True | XLOC_011525 |
| TCONS_00022963 | other | upstream | 1845190 | 30448532 ~ 30460493 (+) | False | XLOC_011524 |
| TCONS_00023012 | other | downstream | 131884 | 32456803 ~ 32456919 (+) | True | XLOC_011554 |
| TCONS_00023017 | other | downstream | 298012 | 32622931 ~ 32629551 (+) | False | XLOC_011558 |
| TCONS_00023019 | other | downstream | 298024 | 32622943 ~ 32627740 (+) | False | XLOC_011558 |
| TCONS_00023024 | other | downstream | 299971 | 32624890 ~ 32630190 (+) | False | XLOC_011558 |
| TCONS_00023025 | other | downstream | 303005 | 32627924 ~ 32631514 (+) | True | XLOC_011558 |
