RNA id: TCONS_00024709


Basic Information

Item Value
RNA id TCONS_00024709
length 897
lncRNA type intronic
GC content 0.42
exon number 3
gene id XLOC_011555
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32470672 ~ 32497173 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAGTGTAAATCTTGAAGCAAACAGATGTATCTTGTGTGATCCACTCACCGAAGAGTTTATTTAGCACAGAAGACAATGACAAAAAGAAAACTACAGTAGTTGgctttaaaaaactgtttaaataactGAATTCCACTTCGTTAGATATATGTTAACCCCTTAGCGGTGTATGGGTTAGTTTAATGATGCTATTCATGCATTTTTGGAAGCTATCCAACACTATTATACAGCATGGAAGGGCCAGGATAGAATGTATAACTACTTTGACTGTGTTAATCTTtttcttttctattattttttagtttttttcaccCTTTGTTATGATAGGACAGGagagatttcagacaggaaagcattgtgagcagagagagggaaaggatcagCAAGGGACCtcaagctgggaatcgaactcaggtcgccgtgagcaGgcgACACAGTTGCTCAGTGTTGAGCActgacacctcacagcaaaaaggttgctggttcgagcccgagctgggccagttggtatctctgtgtggagtttgcatgctctctttctgttggcgtgggcttcctccaggtgctctgcttcccccacagtccaaaaacatgcgGATCTATCATATTTGTTGAGAACTGAGCTATGTTTGACTCCACGCCATTTTTTCACGAATGACTTTTGGGACCTCACTTTGTCCGTTCAACAATGATGTCTTCTGTTAACTGCTCTCACAGCAGCTAAAAATTGCTGGTCAATCGCTGGTATCCTCCTCATACCATGGACAGATGAACCTGGACTGTGGATTTGTTGGACATTCTCTTGATGGAACTCTCAACTTTCCATATACAGCATGCGCTAATGTGAAAACTGTCAGTATATGGCATTCAGCTTTTGATGTTGTGTCGTCTTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024705 lncRNA upstream 24014 32365108 ~ 32446658 (+) False XLOC_011552
TCONS_00024707 lncRNA upstream 24014 32370265 ~ 32446658 (+) False XLOC_011552
TCONS_00024708 lncRNA upstream 47122 32422599 ~ 32423550 (+) True XLOC_011553
TCONS_00024706 lncRNA upstream 48168 32365199 ~ 32422504 (+) False XLOC_011552
TCONS_00023010 lncRNA upstream 75631 32365256 ~ 32395041 (+) False XLOC_011552
TCONS_00023016 lncRNA downstream 125758 32622931 ~ 32625104 (+) False XLOC_011558
TCONS_00024711 lncRNA downstream 125758 32622931 ~ 32630190 (+) False XLOC_011558
TCONS_00024710 lncRNA downstream 125758 32622931 ~ 32630190 (+) False XLOC_011558
TCONS_00024712 lncRNA downstream 125758 32622931 ~ 32631514 (+) False XLOC_011558
TCONS_00024713 lncRNA downstream 125770 32622943 ~ 32630190 (+) False XLOC_011558
TCONS_00023009 mRNA upstream 105715 32360673 ~ 32364957 (+) True XLOC_011551
TCONS_00023008 mRNA upstream 110183 32343121 ~ 32360489 (+) True XLOC_011550
TCONS_00023006 mRNA upstream 136565 32158990 ~ 32334107 (+) False XLOC_011549
TCONS_00023005 mRNA upstream 137947 32158951 ~ 32332725 (+) False XLOC_011549
TCONS_00023003 mRNA upstream 463440 31914877 ~ 32007232 (+) True XLOC_011546
TCONS_00023013 mRNA downstream 3214 32500387 ~ 32525649 (+) True XLOC_011552
TCONS_00023014 mRNA downstream 34681 32531854 ~ 32551256 (+) True XLOC_011556
TCONS_00023015 mRNA downstream 74411 32571584 ~ 32608521 (+) True XLOC_011557
TCONS_00023018 mRNA downstream 125760 32622933 ~ 32630283 (+) False XLOC_011558
TCONS_00023022 mRNA downstream 126758 32623931 ~ 32629674 (+) False XLOC_011558
TCONS_00023012 other upstream 13753 32456803 ~ 32456919 (+) True XLOC_011554
TCONS_00023007 other upstream 145753 32305683 ~ 32324919 (+) True XLOC_011549
TCONS_00023004 other upstream 401300 32069258 ~ 32069372 (+) True XLOC_011547
TCONS_00022977 other upstream 1672753 30796873 ~ 30797919 (+) True XLOC_011530
TCONS_00022973 other upstream 1867065 30598373 ~ 30603607 (+) True XLOC_011527
TCONS_00023017 other downstream 125758 32622931 ~ 32629551 (+) False XLOC_011558
TCONS_00023019 other downstream 125770 32622943 ~ 32627740 (+) False XLOC_011558
TCONS_00023024 other downstream 127717 32624890 ~ 32630190 (+) False XLOC_011558
TCONS_00023025 other downstream 130751 32627924 ~ 32631514 (+) True XLOC_011558
TCONS_00023026 other downstream 155208 32652381 ~ 32652505 (+) True XLOC_011559

Expression Profile

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