RNA id: TCONS_00000193


Basic Information

Item Value
RNA id TCONS_00000193
length 2526
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_000101
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8593560 ~ 8597015 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTTTTCTGTTTTAGGAATATTTGACGATGGCATCTAATGCAAGAGGCAACAGACCCACCGTGTTCGTGGTCGGTGACAGCTACATTCGCCGTGGGGAACAGTGGGCAAGGCAGACTGTCGGGACCAACCTTGGTCTCGACGCCCATATCAGGTGGTTTGGCTGTGGAGGCTTGGTCTGGAGAAAccttctctctttctttcaccGCTGTCTTGGAGGAAGAGCTGTGCCAGATGTCCTGCTTGTTCACTGTGGTGGAAATGATCTTGGTAAGATCAAGAGTATTATACTTGCCGCAATGATCAAGCAGGACTTGCGAGACCTCCATAGACAGTTCCCTCAGATGAAGATTATCTTCTCTGCCATCACCCAGCGATGCCTGTGGAGGTCTGCTGAGAATCTGAAGAAGGTTGACAGGGCACGGCGCTTTGTCAACCGTGTGATGGCTACTTTTATGGTGTCAGTTGGTGGTGCCATTGTTCATCACCCTGAGATAAAACATAAAGATCCTAGCCATTTTTTACGTGATGGAGTTCATTTGACCCCTTTGGGCaatgacatatttttaaacaacCTTGCCCGGTGTCTGAAAGATCAAATCCAGTAGGGTGATGCTGGATTTGAAGTTTCCACCAAATTTAGGGATGAAAAATGGCTAcgatgttttagtttttttgataTGTGATGaacaatgtgtgtgttttttttttgttgtttatttgatgttgttttaccTAGCCATCACACTTCAGACAGATCTGTCACAGCTTTTTCTCCCTCTTCTACCTTTTCCCCTCTTCTCCTCTTTTCCAGACCCTATGCTTCCTCAGCCAATCCACCTGATAAACTTCTACAGCACTTTACAATACGGGGcacataattaatattattctatttacaaacatgaactaatatatgtattattaattgatagtttgttcatgctagtaaaaaCACTATAACTATGTGTCCCGTATTTAAAAAGTGTTGCATTTATTTTTCCCCACGGTGAATGTagctgtcatgatcaccagctgGGGCATGCACAACCTCTACTAGATGACACTCTATTCCACATCTGGATTACATTTCCCATAAAGCTTTGCACCTCCACAGATGATACATTTTACCAGGAGGATTTCCTTGATTGCTGTTTCACTTTTTTTCTGTCATCTGGACTACTTAAGACTTACACATCAGAAACTGGAATGGATAGTCCAATTTGTTGGAATCATTCCTTTCGGCCAGGATGAACTGATTCAGGTTTCAGGATTTATATATTGATGATAGTTTGGCATCCTTTCACCAGCTTTAGCCGAGACACCACTTACCAGCTTCAAACTTTTTCATTGTCTACATACAAGACATttttgagaaaacattttacactgTGTGCAGAAACCTGCACATGCTGAATTGGACAGGGTGGCAGATATTACGCCATTTGAGAAGGGATCCGTGTCTTCTTGAGAATATAATAATTTTCTGTATGCAACATTTGGAAGATATGAAGTTCCTAcatgatcatgttttttttttttttcattcattttcgtttttacttagtccctttattaatctggggtcaccacagtggaatgaatcgccaaataatccagcatttgttttacctttttgccacaacccatcactgagtAACACCCatgcattctcattcacacacatacattacggatatattagcttacccaattcacctctaccctcttagaacttgtgggggaaaccagagcacctggaggaagaaCGCCAACACGTACTGTATAAAGGTTTTCTTGTTTTATGTTATCAGGTTTTTGATTTTCATTGTTTCATGattcttaattgtttaatgtctGTCTGGATTTTGTATTACTTTGTGGATTACCTGACAGTGCTGTTTGCTCCTCATTTTGACCCTGCCTGATAGAGCTGCACAATGCATCGTTCTAGTGTCATTATAGCAATGTGATCAtttacaatagtcacatcacaggatatgcaatgttgagtttgttttataatgtatcatttgcatgtgtttttgaggcttgtaactatataataattttaaaaggatTCAGGAATAAGAGTGtaccatttttaaattttaatgcaattaattttacttaattatttttattattacctgAATTACCTGAGATTCAGAAAACACTGttcattttaattgtatatttgtcATGCATTTATCAATGTTTGTAGATTGTTTCTTAGATTTTACACATGTATTCCCACTACAGAATCATCTCAAtcaatctaaacttgttttttttttttattcaaatataaatattcaagTTATGTGGTGAAATTTTATTCACATTGCAATATACAATTGTAGGAATAACAAAATATGTTAGATTTTTgacatcatgcagccctactgctTGCTTTGACACTACTTGGTTCATAAACTGCATTTTTGAATTCTCACTTATGTCATCCCTAAGTTATCATGATTTTGTTTTGGTGttgattttgtaaaaaataaaaattttatcctG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000161791

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000192 lncRNA upstream 2924 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00003027 lncRNA upstream 2924 8587345 ~ 8590636 (+) False XLOC_000100
TCONS_00003028 lncRNA upstream 2924 8588232 ~ 8590636 (+) True XLOC_000100
TCONS_00000190 lncRNA upstream 16286 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00003026 lncRNA upstream 18503 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000197 lncRNA downstream 97276 8694291 ~ 8699111 (+) True XLOC_000104
TCONS_00003029 lncRNA downstream 353859 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00000198 lncRNA downstream 353859 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00003030 lncRNA downstream 363989 8961004 ~ 8965939 (+) True XLOC_000105
TCONS_00003031 lncRNA downstream 370464 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00000191 mRNA upstream 7494 8579197 ~ 8586066 (+) True XLOC_000099
TCONS_00000189 mRNA upstream 53510 8534698 ~ 8540050 (+) True XLOC_000096
TCONS_00000187 mRNA upstream 61551 8521323 ~ 8532009 (+) False XLOC_000095
TCONS_00000186 mRNA upstream 61553 8521323 ~ 8532007 (+) False XLOC_000095
TCONS_00000188 mRNA upstream 63747 8521332 ~ 8529813 (+) True XLOC_000095
TCONS_00000194 mRNA downstream 4920 8601935 ~ 8610564 (+) True XLOC_000102
TCONS_00000195 mRNA downstream 65515 8662530 ~ 8670486 (+) True XLOC_000103
TCONS_00000196 mRNA downstream 97181 8694196 ~ 8702684 (+) False XLOC_000104
TCONS_00000199 mRNA downstream 387053 8984068 ~ 8988504 (+) False XLOC_000107
TCONS_00000200 mRNA downstream 389123 8986138 ~ 8988504 (+) True XLOC_000107
TCONS_00000154 other upstream 1529617 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 1805756 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 2408028 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 3091476 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 3143116 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 557079 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 557978 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 621633 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 1454759 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 1454769 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

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