RNA id: TCONS_00023022


Basic Information

Item Value
RNA id TCONS_00023022
length 920
RNA type mRNA
GC content 0.50
exon number 9
gene id XLOC_011558
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32622931 ~ 32631514 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTCATTGGTTCACTTGCCTCAAGTGTCCTTGATGTACCACTTGACCATTGCTGGCTGACAATTTAGAGAATGTGGCGGCTGGCGTTCCTGTGTGTGATCTCAGCCCTTTCAGTGAGCTGGGCCCGACCTCGCCTCCCTCCCTTGTCCCATGAGATGGTCAACTTCAtcaacaaagcaaacactacttGGAcgGCTGGACATAACTTCCGTGATGTGGACTACAGCTATGTAAAGAAGTTGTGTGGGACTTTTCTGAAGGGTCCCAAACTCCCTGTCATGGTTCAATATACAGAGGGCCTCAAGCTCCCAAAAAACTTTGATGCAAGAGAGCAGTGGCCCAACTGCCCCACACTCAAAGAGATTCGAGACCAGGGTTCTTGCGGTTCATGCTGGGCATTTGGAGCTGCCGAAGCTATCTCAGATAGAGTATGTATCCACAGTGATGCCAAAGTGAGTGTGGAGATCTCCTCTCAGGATCTGCTAACCTGCTGTGACAGTTGTGGCATGGGATGTAATGGTGGATACCCGTCTGCTGCTTGGGATTTCTGGGCCACAGAGGGTCTGGTCACTGGTGGACTCTATAACTCCCACATTGGCTGTCGTCCATATACCATTGAACCCTGTGAGCACCATGTGAATGGCAGTCGCCCTCCATGTTCAGGAGAGGGTGGAGACACTCCAAACTGTGACATGAAATGTGAACCTGGCTACAGCCCCTCTTACAAGCAAGACAAACACTTTGGGAAGACGTCCTACAGTGTGCCATCTAATCAAAATAGCATCATGGCTGAGCTCTTCAAGAACGGTCCAGTAGAGGGAGCCTTTACGGTCTATGAGGATTTCCTGCTCTATAAATCTGGTGTATACCAGCACATGAGTGGATCTCCTGTAGGTGGTCATGCCATTAAAATTTTGGGC

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051276 chromosome organization biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0031101 fin regeneration biological_process
GO:0051301 cell division biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0060026 convergent extension biological_process
GO:0090504 epiboly biological_process
GO:0005764 lysosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0017054 negative cofactor 2 complex cellular_component
GO:0090571 RNA polymerase II transcription repressor complex cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2650 Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within dorsal/ventral pattern formation; fin regeneration; and morphogenesis of an epithelium. Predicted to be active in extracellular space and lysosome. Is expressed in several structures, including blastoderm cell; endocrine system; macrophage; midbrain hindbrain boundary; and yolk. Human ortholog(s) of this gene implicated in diabetes mellitus. Orthologous to human CTSB (cathepsin B).

Ensembl:

ensembl_id ENSDART00000144217

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024709 lncRNA upstream 126758 32470672 ~ 32497173 (+) True XLOC_011555
TCONS_00024707 lncRNA upstream 177273 32370265 ~ 32446658 (+) False XLOC_011552
TCONS_00024708 lncRNA upstream 200381 32422599 ~ 32423550 (+) True XLOC_011553
TCONS_00024706 lncRNA upstream 201427 32365199 ~ 32422504 (+) False XLOC_011552
TCONS_00024473 lncRNA downstream 86523 32716197 ~ 32716792 (+) True XLOC_011561
TCONS_00024714 lncRNA downstream 151028 32780702 ~ 32837239 (+) False XLOC_011562
TCONS_00024716 lncRNA downstream 151028 32780702 ~ 32870816 (+) False XLOC_011562
TCONS_00024715 lncRNA downstream 151028 32780702 ~ 32870816 (+) False XLOC_011562
TCONS_00024717 lncRNA downstream 151099 32780773 ~ 32837239 (+) False XLOC_011562
TCONS_00023015 mRNA upstream 15410 32571584 ~ 32608521 (+) True XLOC_011557
TCONS_00023014 mRNA upstream 72675 32531854 ~ 32551256 (+) True XLOC_011556
TCONS_00023011 mRNA upstream 96611 32374876 ~ 32527320 (+) False XLOC_011552
TCONS_00023013 mRNA upstream 98282 32500387 ~ 32525649 (+) True XLOC_011552
TCONS_00023009 mRNA upstream 258974 32360673 ~ 32364957 (+) True XLOC_011551
TCONS_00023029 mRNA downstream 528676 33158350 ~ 33201840 (+) False XLOC_011566
TCONS_00023031 mRNA downstream 597281 33226955 ~ 33230039 (+) True XLOC_011567
TCONS_00023032 mRNA downstream 666762 33296436 ~ 33309689 (+) False XLOC_011568
TCONS_00023033 mRNA downstream 667178 33296852 ~ 33304049 (+) True XLOC_011568
TCONS_00023035 mRNA downstream 682110 33311784 ~ 33339480 (+) False XLOC_011570
TCONS_00023012 other upstream 167012 32456803 ~ 32456919 (+) True XLOC_011554
TCONS_00023007 other upstream 299012 32305683 ~ 32324919 (+) True XLOC_011549
TCONS_00023004 other upstream 554559 32069258 ~ 32069372 (+) True XLOC_011547
TCONS_00022977 other upstream 1826012 30796873 ~ 30797919 (+) True XLOC_011530
TCONS_00022973 other upstream 2020324 30598373 ~ 30603607 (+) True XLOC_011527
TCONS_00023026 other downstream 22707 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023027 other downstream 72031 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023028 other downstream 528620 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023034 other downstream 668674 33298348 ~ 33298470 (+) True XLOC_011569
TCONS_00023050 other downstream 955672 33585346 ~ 33585462 (+) True XLOC_011577

Expression Profile

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