RNA id: TCONS_00024717


Basic Information

Item Value
RNA id TCONS_00024717
length 2973
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_011562
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32780702 ~ 32870816 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGTCAATATACGTTTTTAACATATTCCCCTTCCGTTGCAAAATACAGCAACTATTAAAACTGGATCTTGCTTTGTGAAAAATGCATCCGTGCTACAAATTCGACCAGGTGAAAGAAGTAAGCAGTTTCATACTACATCTGCTGGCTCTGATGTCTGTCTCCATCTGCCGACCATATAATGCACATGTTGAAGCAAACTCCAGTTCCAGTACCTCCATCTGCTGgagATAATGGATTGACAGAGAGCAAACAAGTCTCAAGGCCAGGGGGCTGAAAGCCTAAGAGTCCACCCACTCCCTCCCAGTTTCTCTCTCTATCACTGCTTGTCCGGGAGCTTGACTGAACTTCAAAAGAACAACATCCCAGCGAACGAGAAACGTTACACTGAATGCTGGACATTCGGCTCCAGCTAATCAATAGTACATAGAAAGCAAAACCTTGCAGTTTGATAAACTCTTGGCTGGAGTGTCAATCAGGCAAACAGATTGCATGTTTCCCTCTCTGATAAAGATTCTTTCAAAACCCAGTGTGATGCAACTGAGCTCCACAAACTGTCCCGGCAACCTTGAAGCAGGCTTAGGTTCTCACTGCAAGTGCTGGACAAACATGCgcatgctgctgctgctgattcTGCATTGGCCTTGATGAAAACTATTTTTCATACTTAAGAAAACTTTGAGCAAGCACCATATGCCCATTTCTCAAGGCACGCTGGCACATAGCGAGTGTGTGCGTGAGTGGATATATTTGCGCTCACCTTTAAATAAGGTCATTCGCTGGGTTGTGTTTTCTTTCACAGAAGACGAAACAAGCATTATAAAAGCAGTAGTTCAGCCGAAAAAAAGGACATTGCCGTTTTTAACCtctttacaaaacaaaattattaagaATAAGCTGATAAAAAAAGTATTGTTATTTTTCAGTGTAAAGGCCCTGTGATTCTCGAATGACAAGGTCATCATTTTGAACAGATTCAGACCAAAACAAAGTTGCCAACTTGAAAAGTTTGGTCTGTTTGGTAAACACTTTAAAACCTCTATTGAGTCGTGCCGAAAATGCAACTGATATATGCGGGTCTCGGTAACTCGGCATTCTTTAGCATGGAAATTTTCTTCAGGTTTTATAGATCAGACATCTGTGTATAAAAACAAACACCGAAGAACTGCTTAATAATTGAAATTGAGGTGTAATtctaatgggctatatgcacagctagtgttttgcAGCCAATGATGATCTTCcggtgaaaggtttatgtgactattttcagtttcttaaggttccttttacaacatcagtgttgtaatgtaattaaaatataaccaGTTAAGTAGACTtgagcatccatttggttgttttAAGCATAAAAAGAGACGAAAAACCATTTAAACTCTAGCGCTGTTATTTGTGGCAGGCTCGCGCAGacactctattgaaaatactggggtaaaattaatttccatattttacaGAACTGATGTGGAAAATATAAATcagtgcagtgcttcttgtttggtctgatacacACTTTATATCTTAAAGAtcgctattttttttaaagaaatcagatcttaaacgcatCGATTTTGTATTGGATGACAATTCATCGGAAGCCCTGGGGTTGacagactgaaattaaaagtctgtgtgcatataccccattgaaaGCAACTCTGATACTTTAAaagtttaaaggaatagtttacatAAAAATACTAGTCTCTTATCATTTACCAAACCTtcatttgttcaaaacctatttcagtttcttttattttgaaatatgctggttgctgggaccgattgacttctatagtatttttattctactatagaagtcaattggtgccagaagaaagaaaatatgaAAGTTTAAACCCacatgaggaagagtaaatgatgagttaatgttcatttttggttcaactatccatttaaattgctattaaatactatttattcatGTAAATGGTGCCCTCAATAGCATGTTCACTCACCACAAACTACTTGTCAAGTTTTGTTGtagttataaaaaatatactTCACTATGAGCATATGTGGCGTTTAACATTGTTGCAGTGCATAAAATCTGAATAATTTGTTCACAAATTTGACTtaatagctacgtttccatccacctatttttatgtgcatgtgtGATATGCTCTAAAAaaatcggttgatggaaacgccaagatgcgcacacattttgaaaatgcacataaaaatgtatttgcataaCTGACtggaataaaaattttatttgataagatgcgcataaactatgttggaaacatttttactgaacaaaattcctgtatgcgcattaaaaaaggtcatgtgattttgttatgagaTTATGTGATTGTAAAAATGCTtgtgaatagacaaaccagcaggctaacCGAATTgtaaaatgaaatgtgtttttgtcattctaaaacgccttaaccgtttcaatattagtgttattatatcattaattacctccagaactgccAAAAGCTTCTATGCTCTgcatctcacgccttcaaacaccTCCATGCGTTCATTGCATGCTGGCATTGCCTTCTGAgccgcaagtcatttattaaataaagaaaagactgacgcagcttctcctaccgcagcaaattccgtctttactgttgatatttggcgccagtaaATCAAGAAGTGACGATTCTGTTCTCTTTGAGtacttggatggaaacactgctttattcgcatgtcttttatgtgatattccagttttgcggaaacagtttattcgcattttttaaggaaacatagctaatgaaatTTAGGCCTAGTGTAAAAACTGTATTCaccacttttaaaatactttattggTGGTTCTGTATCCTTTTAGAAGCTTGATTCCAATGTCACGAACACCAAAATATATCAGAAAACGAATCACTTTGTGTTTTATAGCGAAACGAACTCATTATATATCTCTGTAATCGAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024473 lncRNA upstream 63981 32716197 ~ 32716792 (+) True XLOC_011561
TCONS_00024713 lncRNA upstream 150583 32622943 ~ 32630190 (+) False XLOC_011558
TCONS_00024474 lncRNA downstream 265264 33102503 ~ 33109918 (+) False XLOC_011563
TCONS_00024719 lncRNA downstream 272467 33109706 ~ 33111166 (+) True XLOC_011563
TCONS_00024475 lncRNA downstream 281299 33118538 ~ 33120510 (+) True XLOC_011564
TCONS_00024476 lncRNA downstream 283341 33120580 ~ 33121796 (+) True XLOC_011565
TCONS_00023030 lncRNA downstream 347098 33184337 ~ 33194021 (+) True XLOC_011566
TCONS_00023018 mRNA upstream 150490 32622933 ~ 32630283 (+) False XLOC_011558
TCONS_00023022 mRNA upstream 151099 32623931 ~ 32629674 (+) False XLOC_011558
TCONS_00023015 mRNA upstream 172252 32571584 ~ 32608521 (+) True XLOC_011557
TCONS_00023014 mRNA upstream 229517 32531854 ~ 32551256 (+) True XLOC_011556
TCONS_00023011 mRNA upstream 253453 32374876 ~ 32527320 (+) False XLOC_011552
TCONS_00023029 mRNA downstream 321111 33158350 ~ 33201840 (+) False XLOC_011566
TCONS_00023031 mRNA downstream 389716 33226955 ~ 33230039 (+) True XLOC_011567
TCONS_00023032 mRNA downstream 459197 33296436 ~ 33309689 (+) False XLOC_011568
TCONS_00023033 mRNA downstream 459613 33296852 ~ 33304049 (+) True XLOC_011568
TCONS_00023035 mRNA downstream 474545 33311784 ~ 33339480 (+) False XLOC_011570
TCONS_00023027 other upstream 78952 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023026 other upstream 128268 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023025 other upstream 149259 32627924 ~ 32631514 (+) True XLOC_011558
TCONS_00023024 other upstream 150583 32624890 ~ 32630190 (+) False XLOC_011558
TCONS_00023019 other upstream 153033 32622943 ~ 32627740 (+) False XLOC_011558
TCONS_00023028 other downstream 321055 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023034 other downstream 461109 33298348 ~ 33298470 (+) True XLOC_011569
TCONS_00023050 other downstream 748107 33585346 ~ 33585462 (+) True XLOC_011577
TCONS_00023073 other downstream 3077771 35915010 ~ 35915126 (+) True XLOC_011591
TCONS_00023075 other downstream 3777076 36614315 ~ 36614432 (+) True XLOC_011593

Expression Profile

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