RNA id: TCONS_00023030


Basic Information

Item Value
RNA id TCONS_00023030
length 847
lncRNA type retained_intron
GC content 0.45
exon number 7
gene id XLOC_011566
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33158294 ~ 33201840 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAGATTGTGTAGTGGCCGATCCCAAAAAGGGTTCAAAAATGTATGGCCTGAAGAGCTACATTGAATATCAGATCACACCTAATGTAAGTCTCTTCGAaacaccattaataataatattgggtCTTTGCCACTGTTTGGCTAAGCTGTCCGAATTCTTTTTCAGACTACAAACAGACCCGTCAATCACCGATACAAACACTTTGACTGGTTATATGAGAGGCTGGTGGAGAAGTTTGCCTGTGCTCTGCCAGTCCCAGGTCTGCCTGATAAACAAGTTACAGGCCGATTTGAAGAGGAATTTATCAAAATGCGCATGGAGCGCCTGCAGGGCTGGATGTCCCGGATGTGCAGACATCCTGTAATCTCAAACAGTGAAGTTTTTCAGCTCTTCCTTAACTACAGAGACGAGAAGgaGTGGAAACTAGGGAAGCGGAAAGCGGAGAAAGATGAAACGGTGGGAGTGAAAATCTTCTCCACCATTGATCCAGAGCTCCCAGAGTTGGATCCTGCTCAAGTAGAGCAGAAGTATGAAGTGTACAACCAGTTTACCAGATCTATGGACAACAGTGTTAAAGAACTACTAGCAGTTGGGAATCTTCACTGGAAAAGATGTACAGGCCCATTGCAGAAGGAGTATCGGCAGATTGGAAAGGCATTTCAGAACATGTCATCAGTTTTCAACACCAGTGGATACCCAAgGGAATCAACTCTGACAGAAGCATTAACTGCAACAGGGAAAACGTACGAGGAAATAGCGGAAGTCATTGCAGCTCAGCCAAGGAAAGATCTTCATTTCCTGTTGGAAACAAACAACGAATACAAGGGGCTGCTGGGCTGCTTCCCTG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0015031 protein transport biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-66 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis; intracellular protein transport; and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Is expressed in blood. Orthologous to human SNX9 (sorting nexin 9).

Ensembl:

ensembl_id ENSDART00000098593

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024476 lncRNA upstream 62541 33120580 ~ 33121796 (+) True XLOC_011565
TCONS_00024475 lncRNA upstream 63827 33118538 ~ 33120510 (+) True XLOC_011564
TCONS_00024719 lncRNA upstream 73171 33109706 ~ 33111166 (+) True XLOC_011563
TCONS_00024474 lncRNA upstream 74419 33102503 ~ 33109918 (+) False XLOC_011563
TCONS_00024718 lncRNA upstream 313521 32780773 ~ 32870816 (+) True XLOC_011562
TCONS_00023045 lncRNA downstream 239545 33433566 ~ 33436811 (+) False XLOC_011574
TCONS_00024477 lncRNA downstream 984171 34178192 ~ 34182830 (+) True XLOC_011579
TCONS_00024478 lncRNA downstream 1075099 34269120 ~ 34287056 (+) True XLOC_011582
TCONS_00024720 lncRNA downstream 1440077 34634098 ~ 34675436 (+) True XLOC_011583
TCONS_00023069 lncRNA downstream 2049744 35243765 ~ 35244470 (+) True XLOC_011586
TCONS_00023018 mRNA upstream 554054 32622933 ~ 32630283 (+) False XLOC_011558
TCONS_00023022 mRNA upstream 554663 32623931 ~ 32629674 (+) False XLOC_011558
TCONS_00023015 mRNA upstream 575816 32571584 ~ 32608521 (+) True XLOC_011557
TCONS_00023014 mRNA upstream 633081 32531854 ~ 32551256 (+) True XLOC_011556
TCONS_00023011 mRNA upstream 657017 32374876 ~ 32527320 (+) False XLOC_011552
TCONS_00023031 mRNA downstream 32934 33226955 ~ 33230039 (+) True XLOC_011567
TCONS_00023032 mRNA downstream 102415 33296436 ~ 33309689 (+) False XLOC_011568
TCONS_00023033 mRNA downstream 102831 33296852 ~ 33304049 (+) True XLOC_011568
TCONS_00023035 mRNA downstream 117763 33311784 ~ 33339480 (+) False XLOC_011570
TCONS_00023036 mRNA downstream 119545 33313566 ~ 33339626 (+) True XLOC_011570
TCONS_00023028 other upstream 11184 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023027 other upstream 482516 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023026 other upstream 531832 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023025 other upstream 552823 32627924 ~ 32631514 (+) True XLOC_011558
TCONS_00023024 other upstream 554147 32624890 ~ 32630190 (+) False XLOC_011558
TCONS_00023034 other downstream 104327 33298348 ~ 33298470 (+) True XLOC_011569
TCONS_00023050 other downstream 391325 33585346 ~ 33585462 (+) True XLOC_011577
TCONS_00023073 other downstream 2720989 35915010 ~ 35915126 (+) True XLOC_011591
TCONS_00023075 other downstream 3420294 36614315 ~ 36614432 (+) True XLOC_011593
TCONS_00023082 other downstream 4059727 37253748 ~ 37281313 (+) True XLOC_011598

Expression Profile

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