RNA id: TCONS_00023070


Basic Information

Item Value
RNA id TCONS_00023070
length 1779
lncRNA type antisense
GC content 0.41
exon number 2
gene id XLOC_011587
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 35278788 ~ 35288741 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCAACCGAAATTCACTTCCGGGCTAGGGTTGAATTTCACACCAGTGCTTCATTCGGAAAGGTTCATCCCTATGTCCTAAGCCCTGCAGAGAGTCCCTCTAAGGGAATTGAGAGCACTGGGGTGAGTCTTTCCGAATTTAACGCAGTGTGTGACACCAAACAATTCCCCTGCTCAAATGATCATGGCCCGAAGTGTCCATCAGGATTAACCTTCGGTCCGAGCCCTTCGAGAAACCCTCCAAAAGAGCCACATATGCGAAACATCCAGAAAACAGACAAGCGGCCGGATGGAGCAGCGCCGCTGCGCTCCTCCAGTCCTGTGGAGGGCGCTGTCAGTGAAGCCCCCGGCTCTCCAATACCTCCACCTAAAGCAAGCGGCAGGCTCGGTACGTCTCCTCCAGTCTCTTCAGGCCTGTCGGGATGGAGCCTACTCAGCTAGCTGTGATATTAACCCGCGGCGTGAGATGCCCACCGGTTGATGAAGAGCTCGAAGGCGGAGGAGGAAAAGAAAAACGTTTGAAGGAGATGAGCCAAATTCCTCGTTCAGGGACCACCGGTGTTGGTATGTTAGGTGGGTAAAGGGTCGTCGTCTCCTTTACTGCATTTGCACTTGCAGCACAGGACGAATGGTGTGGCAAGCAGCAGGAACGGAGAGGCCACCAGTAAGAGCAGGCCAAAACCAGCAAAGATACCAACAACCTGAGGAGAAGCAGATGAGAAGGTTTCAGAAGAAGTGTTCGAGAAGTTGAATCAAGTTAATCTTACAAGTTACTTGAACTTGCGTTACATTAAAACAACTTGAAACATGCTGAGGTAATAAGTTGAAACACAGCAAGTAAAATTTTTACAAACGTTTAGTActaacaaagactatagaatacacaagatctGTCACTTGCATACATTGTacaaaaagtctgttactttacgATGCagggaaaaaaatttaaataacggctgttaaactgtaaacatttatcgtaaaataacagacagtaaattaaagaaatttatcggaaatttaaatttaagtcaatttctttaatttactgtctgttattttacaggaaagtctgtaatttaacggccgttattttactcCAGCAGCcgggaaaaaaaaaacgtaaaataacagattttttttacagtgtagttttgaatggggaaaagtgtaatgttcaacatggcgaataaagccccgccttcaTCGATCACTATAAACTGTGGTTTTCTCCGGAGGGGAAAAGATCACACCAGACGTGtttttacgaaaaaaaaaaacacgaaacaCCTTTTTATGAAATCTCTGCAAATACTTGCTTTACAGACAcaaaaatatatccaaataaagcttgaaacctgttttgtaatctgtatgaaacgaacgcAAGGTACAGTTCACCCTGTCAagtgcacatcacatgacagcaactgcTTAAACGCCTACAAACTTGTAAATAAAGTGTTGCTGTCATTTCTGGAAGAaattcgccatcaagaccaagtttaaaattacttcagaagagcagcatgATCAGAAAATCATCATTCAGAGGAcgataatgtatgtatgtattaatgtaaccataaatgaggttggtgtcatgatctTGTTTTTTCGagcgcattagcttgggcaacctgaaaatatgctgattttgtttgattcaaatgtttagaaactaaatgtgtatatatatatatatatatatatatataaataattatctgTTCATCTTAAACCCGAATCAAGGCCCAGAATAAATGTTATCAAGGCT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0003365 establishment of cell polarity involved in ameboidal cell migration biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:0009790 embryo development biological_process
GO:0043296 apical junction complex cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0070160 tight junction cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153718

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023069 lncRNA upstream 34318 35243765 ~ 35244470 (+) True XLOC_011586
TCONS_00024720 lncRNA upstream 603352 34634098 ~ 34675436 (+) True XLOC_011583
TCONS_00024478 lncRNA upstream 991732 34269120 ~ 34287056 (+) True XLOC_011582
TCONS_00024477 lncRNA upstream 1095958 34178192 ~ 34182830 (+) True XLOC_011579
TCONS_00023045 lncRNA upstream 1841977 33433566 ~ 33436811 (+) False XLOC_011574
TCONS_00024722 lncRNA downstream 267571 35556312 ~ 35557562 (+) True XLOC_011590
TCONS_00023079 lncRNA downstream 1939249 37227990 ~ 37235070 (+) True XLOC_011596
TCONS_00024723 lncRNA downstream 2091759 37380500 ~ 37398410 (+) False XLOC_011601
TCONS_00024724 lncRNA downstream 2107100 37395841 ~ 37398410 (+) True XLOC_011601
TCONS_00023088 lncRNA downstream 2222067 37510808 ~ 37549455 (+) False XLOC_011603
TCONS_00023068 mRNA upstream 31414 35243753 ~ 35247374 (+) False XLOC_011586
TCONS_00023067 mRNA upstream 55306 35097024 ~ 35223482 (+) True XLOC_011585
TCONS_00023066 mRNA upstream 470623 34805920 ~ 34808165 (+) True XLOC_011584
TCONS_00023065 mRNA upstream 471569 34805897 ~ 34807219 (+) False XLOC_011584
TCONS_00023064 mRNA upstream 1024555 34244345 ~ 34254233 (+) True XLOC_011581
TCONS_00023071 mRNA downstream 74110 35362851 ~ 35375448 (+) True XLOC_011588
TCONS_00023072 mRNA downstream 142983 35431724 ~ 35437222 (+) True XLOC_011589
TCONS_00023074 mRNA downstream 1299540 36588281 ~ 36589605 (+) True XLOC_011592
TCONS_00023076 mRNA downstream 1338358 36627099 ~ 36681740 (+) True XLOC_011594
TCONS_00023077 mRNA downstream 1927079 37215820 ~ 37221044 (+) True XLOC_011595
TCONS_00023050 other upstream 1693326 33585346 ~ 33585462 (+) True XLOC_011577
TCONS_00023034 other upstream 1980318 33298348 ~ 33298470 (+) True XLOC_011569
TCONS_00023028 other upstream 2105635 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023027 other upstream 2576967 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023026 other upstream 2626283 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023073 other downstream 626269 35915010 ~ 35915126 (+) True XLOC_011591
TCONS_00023075 other downstream 1325574 36614315 ~ 36614432 (+) True XLOC_011593
TCONS_00023082 other downstream 1965007 37253748 ~ 37281313 (+) True XLOC_011598
TCONS_00023083 other downstream 1983278 37272019 ~ 37272133 (+) True XLOC_011599
TCONS_00023087 other downstream 2164935 37453676 ~ 37453807 (+) True XLOC_011602

Expression Profile

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