RNA id: TCONS_00024493


Basic Information

Item Value
RNA id TCONS_00024493
length 981
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id XLOC_011637
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40486306 ~ 40493856 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaacttgactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttgtgtaacttaaattcattacagtttagatacaatcaaatgtccaaaccatctctgagtgaatgacattaaggaaacaggatcaaaaagatcattcattatagaatgtttcatagttggttatatttttcaggtcctcctgatcattctgttctcctggttgtgaggatgtgcagaggctgtatttgtcagtgttaaaagACTTGTGCAGCTGTATCCAGACATACAAGCAGCCGACAAAGAGTTCTGGAGCAGCACAGACAGggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggttgctgcttcaagcttcggctggattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctgtcagacaacctctccaaagtacaataggactaggttcccactacaaggattagatttggctactgcagtcccggtttgggccagcctcacttgtgaagactaaagatgaagacaacatacaagaacaatttcgaggatggcgacacactttttattccacctatatatccccttttatgtgtaagcaacattccacaagataaaacaaaagtaaatgacaggttatttcttttaattttgtctgttttcttggaACATTGTACACAATTTACAACCATAACCATTACaaccattttatttatataaatataggtcagagcaagaaaatgttatgttttcttctggagaaagtcttatatcttttatttcggctagaataaaaacagttttgaattttttaaaaaacattttaaggtcaatattattagcccctttaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024489 lncRNA upstream 6 40486830 ~ 40488757 (+) False XLOC_011637
TCONS_00024490 lncRNA upstream 18 40487541 ~ 40488745 (+) False XLOC_011637
TCONS_00024482 lncRNA upstream 64097 40418211 ~ 40424666 (+) True XLOC_011636
TCONS_00024737 lncRNA upstream 267386 40216437 ~ 40221377 (+) True XLOC_011635
TCONS_00024736 lncRNA upstream 517692 39967027 ~ 39971071 (+) True XLOC_011634
TCONS_00024494 lncRNA downstream 497105 40989973 ~ 40999861 (+) False XLOC_011639
TCONS_00024738 lncRNA downstream 982283 41475151 ~ 41478637 (+) True XLOC_011644
TCONS_00024739 lncRNA downstream 1269317 41762185 ~ 41763364 (+) False XLOC_011646
TCONS_00023134 lncRNA downstream 1269415 41762283 ~ 41763364 (+) True XLOC_011646
TCONS_00024740 lncRNA downstream 1789986 42282854 ~ 42286980 (+) False XLOC_011649
TCONS_00023123 mRNA upstream 620328 39834947 ~ 39868435 (+) True XLOC_011633
TCONS_00023122 mRNA upstream 671220 39790388 ~ 39817543 (+) True XLOC_011631
TCONS_00023118 mRNA upstream 737171 39741943 ~ 39751592 (+) True XLOC_011628
TCONS_00023117 mRNA upstream 740439 39741926 ~ 39748324 (+) False XLOC_011628
TCONS_00023115 mRNA upstream 748769 39697621 ~ 39739994 (+) True XLOC_011627
TCONS_00023124 mRNA downstream 386463 40879331 ~ 40903365 (+) True XLOC_011638
TCONS_00023125 mRNA downstream 497105 40989973 ~ 40999861 (+) True XLOC_011639
TCONS_00023126 mRNA downstream 588644 41081512 ~ 41266561 (+) False XLOC_011640
TCONS_00023127 mRNA downstream 589109 41081977 ~ 41259940 (+) False XLOC_011640
TCONS_00023128 mRNA downstream 589125 41081993 ~ 41092538 (+) True XLOC_011640
TCONS_00023121 other upstream 702851 39785815 ~ 39785912 (+) True XLOC_011630
TCONS_00023120 other upstream 710019 39778647 ~ 39778744 (+) True XLOC_011629
TCONS_00023119 other upstream 717178 39771488 ~ 39771585 (+) False XLOC_011629
TCONS_00023114 other upstream 796067 39692582 ~ 39692696 (+) True XLOC_011626
TCONS_00023113 other upstream 1062551 39426092 ~ 39426212 (+) True XLOC_011624
TCONS_00023133 other downstream 1266940 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023158 other downstream 3370864 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023173 other downstream 3449069 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023179 other downstream 3798537 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023189 other downstream 4517175 45010043 ~ 45011856 (+) False XLOC_011685

Expression Profile

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