RNA id: TCONS_00024494


Basic Information

Item Value
RNA id TCONS_00024494
length 730
lncRNA type read_through
GC content 0.38
exon number 3
gene id XLOC_011639
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40989973 ~ 40999861 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGACGTACAATGACACCGGAAGTACTGTGGTGTTCCCGGAAGCCTCAAGCGACAGGAGCTCAATGTGACATTTCAGACCTGTTATTTGCGATCTGTTAAAGAGGAATAACAATGTTTCTTACTACTGTGAACCGACATTGCTGGTTCAAATGGTGAGTGCTGCTGGCACCGGTTATTCTTTTAACACCAAAAGAGGACGACTGAGAGAAAAACTGGTTTTGCGGAAGAATGACCCCATAGTGAACAAACATGTCCTGTTCTTTGAAAAGAAGAAGGTACGATCTCTCTAAAATGGAAGAGACTCCCACCGATAGCTGATAGACACTATGGAACCTTTAAAGTGGAATGAAAGAACTGCTACAGAATGGTAATGAATGAAACAACTATGAAGGAAGAAGTGCTGTGTGGACCACTGGTGTTATGATACCATAAAGGAGATATATATCCTGTCAGGACAATGTGCTGTTAAGACCATTTAGAAAGAAGCGCATTATGTTggatttgtttggttgttttgctTCCTTTTTTGTACCAAGTCAACGTTTTGACCTACTGTAAATAATCAACCACCTACACAATGACAGATTCCTTTAGGCTAAAGGGAAATGTTTGAATAATTACCCTGCAAAaggtatttaataaaaaaaaatgtgagaacATGTACATAATTGTTATCAAGTAAAAAAGAGATGATGAAAATGATGAGAGTTTTTGATgcattgatttat

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0000502 proteasome complex cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024483 lncRNA upstream 496117 40486306 ~ 40493856 (+) False XLOC_011637
TCONS_00024493 lncRNA upstream 497105 40488763 ~ 40492868 (+) True XLOC_011637
TCONS_00024491 lncRNA upstream 497307 40488252 ~ 40492666 (+) False XLOC_011637
TCONS_00024492 lncRNA upstream 497307 40488597 ~ 40492666 (+) False XLOC_011637
TCONS_00024484 lncRNA upstream 500716 40486317 ~ 40489257 (+) False XLOC_011637
TCONS_00024738 lncRNA downstream 475290 41475151 ~ 41478637 (+) True XLOC_011644
TCONS_00024739 lncRNA downstream 762324 41762185 ~ 41763364 (+) False XLOC_011646
TCONS_00023134 lncRNA downstream 762422 41762283 ~ 41763364 (+) True XLOC_011646
TCONS_00024740 lncRNA downstream 1282993 42282854 ~ 42286980 (+) False XLOC_011649
TCONS_00024741 lncRNA downstream 1283471 42283332 ~ 42286980 (+) True XLOC_011649
TCONS_00023124 mRNA upstream 86608 40879331 ~ 40903365 (+) True XLOC_011638
TCONS_00023123 mRNA upstream 1121538 39834947 ~ 39868435 (+) True XLOC_011633
TCONS_00023122 mRNA upstream 1172430 39790388 ~ 39817543 (+) True XLOC_011631
TCONS_00023118 mRNA upstream 1238381 39741943 ~ 39751592 (+) True XLOC_011628
TCONS_00023117 mRNA upstream 1241649 39741926 ~ 39748324 (+) False XLOC_011628
TCONS_00023126 mRNA downstream 81651 41081512 ~ 41266561 (+) False XLOC_011640
TCONS_00023127 mRNA downstream 82116 41081977 ~ 41259940 (+) False XLOC_011640
TCONS_00023128 mRNA downstream 82132 41081993 ~ 41092538 (+) True XLOC_011640
TCONS_00023129 mRNA downstream 302799 41302660 ~ 41318547 (+) True XLOC_011641
TCONS_00023130 mRNA downstream 337385 41337246 ~ 41368830 (+) False XLOC_011642
TCONS_00023121 other upstream 1204061 39785815 ~ 39785912 (+) True XLOC_011630
TCONS_00023120 other upstream 1211229 39778647 ~ 39778744 (+) True XLOC_011629
TCONS_00023119 other upstream 1218388 39771488 ~ 39771585 (+) False XLOC_011629
TCONS_00023114 other upstream 1297277 39692582 ~ 39692696 (+) True XLOC_011626
TCONS_00023113 other upstream 1563761 39426092 ~ 39426212 (+) True XLOC_011624
TCONS_00023133 other downstream 759947 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023158 other downstream 2863871 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023173 other downstream 2942076 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023179 other downstream 3291544 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023189 other downstream 4010182 45010043 ~ 45011856 (+) False XLOC_011685

Expression Profile

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