RNA id: TCONS_00023135


Basic Information

Item Value
RNA id TCONS_00023135
length 2261
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_011647
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 41992054 ~ 42045253 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGATGTAAAAGGCGTCGTTTGTACCTTCTCTCTCTCCAGTTCCAGCTGTCTTTCTCTCCTCGCACCGCCCAGATAAGAAGAAATTCGCGCCCCTGAGTCAACTCGCCCCGCGTGGTCTCCTGGGTAACGGTGCTTATGGCAACCACTGTAAACAACGCGCTCCGCTGTACCGCGGCGAGCCGCGAACAGAACAGTTAACGTTATGGCTTTCTGCAATACCGAGTATTTCGACCAGATCGGAAATATTCAAAAGATCATACACGAACGTGAGAGGAGAAGACATGAGCTGGAAGAAACACTGTTTTCCTACTTAAGATCAGATGAAAGATTGACTAGGTTGAAGTGTGCCAAGATGCGCTGCTATGCCAAGGAGCTGCACGAGAGAGAGCAGCGAGCAAAGACGCGCAACCTTGAGCTTCTTGGGAATGTGGAGAACTTGGCATCAAAATTAAAAGAATTCTCCATTGATTGCAGCAGGCTGCTTCAAAAGAGGATGGAGTACAAGAATCATATTACCAGACTGAAGAAAGACAGGAGAAAAATGGGGAGCAGGGGCAAATCAGAAGCAGACGAGCACCCGAGCCGATTGAGTACTCAAGGATTATCACAGAGTGCTGCCATCTTCATGGGTCACCAGACCTCCAACGGCTCATCAAGAAATGATGGCGCCACAACCAAACGTTCGCCGTCTCATACAGAGCAGATTCCTAATCATCCTTCACTCCCTCCTTCACAAAGTGGCCTTTGTATGCACTCCCATGTTTCAAAAGCCAGCGGCGCTGGCATTTTATCTGATGACATTCTAAACTCAGGTGATTTCCTTGAGGGCAGGCGTTTGAGTGACGTGCGTGAAAAGCAGATGGAGTCTGATTGGGACATCTCTCAGAGGGCAAGAGAGCAGCAGAGACAGGAAGAACTAAAGTCACCTCACACAACCCTAAAGGAAGCTGAAGTGTCCTCTCGATCTGTGACCGTGAACAAGCCTGCAGACATTGTGTCGTTAGAGCACTGTCCAACTCGCAGTCCTTCCCCAGATACCACTGATCCAAGTGATGCCTCACAGTACATGAACTCAGGAGGTGAGGATAAGGAAGAGTCTGCAGAGGATGAAGATGACTCCGCGCCAATAAATCAGAATCATTCAGATTACACCAGCAACATTCTCAAACCAGACACCTCAATGCATTCAGACAGTGATGATTCAGCATCACAGAGTCAAAGTGGGCATCACGCATCGAGAGGAAATGCGTTAATTCAAGAGCAGAGTATAAAAGCCATGCAAACCCATTGTGGTAGCAAACACAAGAAGGTCAGCACATGGCAGTCTGGACAACATCACTTTTCTGAGTCCCCTAACAGGCTCTCCATGAAGGGATTTTGCCATCTTCTGAAGTGCATTGAGCAGCGTCTCGAAACTGAAGATGTAGTGAACCTCTACAGAATCTCAGTCAATGAGCAGAACCTCAGTGATGATATCATCAGCATATGTAGTCAACGTGGGCGTTTGGATGATATAGATCTGCATGCATGTGGTGCTGTGGTTCTGCAGCAGCTCTCCATGCTATCCTGCAGTCTGCCTCATGGATGCCTTTTACCCAGTGATCTCATCAACTCTCACTGGTCAACCACCTCAAAGCCACAGCAGATCAGattgtgtctGTCAGCTGAAAGTGCTGTGCTGTGGGACTGCTGTTTTACACACATGGTTCAGCTTCAGAAACAGAAACTCCTCAGCACTGACCACATCATCCAGCTCTTCACTCCACTCCTGCTGCCAGCCGACGCCACCTACACTGACAAGGCAGGAAAGCTGTTGAAGAGACTTCTGACCTACAAATCTGAGACCCATTATCCATCAAAAAGTGAATCGTCGTCATCTTCCAGTTTGCCTTCTCTTCTAAACGACAGTGTAGAGATCAAGCCCGCCAGGCCTTCCGGAACAAATGCTCAAACTGGCGAAGAACAAGAGACCAAAGCATATCAGCTGCTTAAACAATCTGTGGCACAAGAGAGGCACTGGAGTGACTCGGAGGAGGAGGTTTCAGAGCCACCAGATGCCCACAAACTGGAGAAGCCTGAGGTACAGCAGGATATTTTAACACAAAACAACCGGAAAAGTGTAAAGACGAAACCTTTCTCTGCTGTCCAATCAAAGGCATTTTGGGGAGAATCTGACGACAGCAATTCTGAGATCGAAATGGCCTTGCGTCCTCAGTCCTACAACACCAGCAGCCATGACTTTGACGATTTTTACGACTGA

Function

GO:

id name namespace
GO:0007051 spindle organization biological_process
GO:0042995 cell projection cellular_component
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-4 Predicted to be involved in spindle organization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in centrosome. Human ortholog(s) of this gene implicated in retinitis pigmentosa 69. Orthologous to human KIZ (kizuna centrosomal protein).

Ensembl:

ensembl_id ENSDART00000182878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024739 lncRNA upstream 228690 41762185 ~ 41763364 (+) False XLOC_011646
TCONS_00023134 lncRNA upstream 228690 41762283 ~ 41763364 (+) True XLOC_011646
TCONS_00024738 lncRNA upstream 513417 41475151 ~ 41478637 (+) True XLOC_011644
TCONS_00024494 lncRNA upstream 992193 40989973 ~ 40999861 (+) False XLOC_011639
TCONS_00024493 lncRNA upstream 1499186 40488763 ~ 40492868 (+) True XLOC_011637
TCONS_00024740 lncRNA downstream 237874 42282854 ~ 42286980 (+) False XLOC_011649
TCONS_00024741 lncRNA downstream 238352 42283332 ~ 42286980 (+) True XLOC_011649
TCONS_00024495 lncRNA downstream 306505 42351485 ~ 42352915 (+) False XLOC_011650
TCONS_00024496 lncRNA downstream 306525 42351505 ~ 42353357 (+) False XLOC_011650
TCONS_00024742 lncRNA downstream 306643 42351623 ~ 42353326 (+) True XLOC_011650
TCONS_00023132 mRNA upstream 525909 41463942 ~ 41466145 (+) True XLOC_011643
TCONS_00023130 mRNA upstream 623224 41337246 ~ 41368830 (+) False XLOC_011642
TCONS_00023131 mRNA upstream 623224 41343167 ~ 41368830 (+) True XLOC_011642
TCONS_00023129 mRNA upstream 673507 41302660 ~ 41318547 (+) True XLOC_011641
TCONS_00023127 mRNA upstream 732114 41081977 ~ 41259940 (+) False XLOC_011640
TCONS_00023138 mRNA downstream 229260 42274240 ~ 42277902 (+) False XLOC_011648
TCONS_00023139 mRNA downstream 229845 42274825 ~ 42278340 (+) True XLOC_011648
TCONS_00023141 mRNA downstream 797652 42842632 ~ 42867415 (+) False XLOC_011653
TCONS_00023142 mRNA downstream 797800 42842780 ~ 42872234 (+) True XLOC_011653
TCONS_00023143 mRNA downstream 968191 43013171 ~ 43019060 (+) True XLOC_011654
TCONS_00023133 other upstream 232129 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023121 other upstream 2206142 39785815 ~ 39785912 (+) True XLOC_011630
TCONS_00023120 other upstream 2213310 39778647 ~ 39778744 (+) True XLOC_011629
TCONS_00023119 other upstream 2220469 39771488 ~ 39771585 (+) False XLOC_011629
TCONS_00023114 other upstream 2299358 39692582 ~ 39692696 (+) True XLOC_011626
TCONS_00023158 other downstream 1818752 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023173 other downstream 1896957 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023179 other downstream 2246425 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023189 other downstream 2965063 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023200 other downstream 3351114 45396094 ~ 45402959 (+) True XLOC_011692

Expression Profile

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