RNA id: TCONS_00024748


Basic Information

Item Value
RNA id TCONS_00024748
length 4269
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_011662
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 43561404 ~ 43565736 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAACTTCATTTATTACTTTTGTAGCATGACATAAATACTCAGTAGACTTTGAAAAGTTGTTCTTTACATCTTATTCGACTGAACCGGCCATTACAAAATAAGAACAAGCTTTGAATAAATAGAGCAAATTCTCTCGTTGTGATTCTCTTTATACAGAAAAAAGTAATTTTGTacatatataatttcattattattattattattattgttctctgtaaaataaaacatctgTATAATTTTAAATACTCATATCCTATTTTCAAttaatacaaaaaacaacaacgcaaaaaaaaaaaaaactgaacaaaagtgTAGAATGAGAATCGGAAGAGGGCACAAATCAGAGAGTGAGCTTAAAAAATCGCATGAAAACAGGCTGGAAGTGGAGTTTGCAGACGCTGAACCTGCCATTTGAGGAAGCGTTTGACTTTTGGCTGATTCGCAGTCCTCGTTTACAACTCAAAATACATTCCAAGAGTAGCTGTAAAAATAAATCCCGACATACAATCAAGACATTCCTGAGGAACGGTCGTGATATTAAAACAGGAAGCAACAGGAAAAACGACAGAATTGTTCCATTCGGTTTAATGTCTACTTGATCGTACCTCTAAATAAAGATGGGGGAGAAAAACATATAAAAGACTACATTATATCAATCCAGCAGAAGTCCTAAAGCTATATCTGCAGTATTGTTAGTGGTGTGCATTTGAAAATTGACTCCAAGTGTTTATCCCAATACTGATGATACTAGACCCTATTAATGACTAAATGTGAGCAATATATGAAGGTCAAAGTAAAGCGATTGAGATCTGATCAAAAGCAACTCTTACTATTTGAAGATAGAACTATTGCAAAACCTGCTTATGTACCACGTCAACCAAAATATAACTACCCTGCCATTCCAAAATAATCCTAATGCAAAGCGTAAAGTTAAGATTACAGTTAGTGTTTCAAAATTGCAGTGTTTTTAAGTGTTTGTAGACATTATTCTGTAAATGCAGGGAAGTCGAGAAACGGGTTTGAAAACAGGAATGATCAGCTTTAACACTTGGTCAAGGGTAATGAGGCAGAAAAAGGCAAGTATTAAGAATCAACCAACCAGCAGAATAAAACCACCTTGTATTGCTAGAACCGGTCACGTTCAACTCAATACATGTCGCTTCATATGAAGCATGCAAACATTGTTGCTTTGGATGCCTAGGATTTAAAAGGAATGTGATCATAAGGCAAAATAATTATGATGATAAATGATGTAATTCACTATTTAGTGTCAATAGGATTGTTTAGTGTTGAAAACTATGTAGTTGATCACTTGCTTATGATAGTAGAGATAATACTGCAACTTCTGAAATCAGTAGTGAGGTCCAAAATCAGTCTTGCGGTGTGGTCACACTTGTAGATTTGGTTTTATAGGTTTTATTGGTCttaccttcattcatcttcagaacacaaattatgatattttaaattaaattagagagctccctcatcctcatAGACAGCAATAGTCCATAGATGTTCAAAGTACATGAAACCGTCCACatgtcttcagtggttcaactgcaaTCATACGAAGTTCCATATGCACTTTTGTGCTACAAAAAACTCAGTAAAATCAATTTTGTTGACCTATTGACAATGTTTTACGTTCCTTTTCTGGATTTTGAGCATTTCGTTcctgttgctgtctatggaggatgagggagctctctgatgtaatctaaaatatcttcttttgtggtctGAAGAATAACCAAGGTCTCAGGGGGTTGAAACGGTATTGCAGATGaggaattaataacagaattttaaatttttattatttgaggtCCTTTGAAATAATGATacctttaaaatgtatatttttctaaataaacatcCATAGCAATGACGTGTGAATTGTAATGTGAATCATTAAGACTATgacaaaaagtaaaacattttgtaaTCTTGATGGTCATATCTTGTGAGATCATGTCCTGCTTTTGGTTTGTTTAGGATGTCACGGATGCAAGTCTGTGTTGTGTTCATTTTTCAGTCAAACCACCCCAGAATTCACCTGGTAGTGAACTGAAATGCTTTTTCAGTGGTGTCTGAATGCTTATTTGGTGAACACCAAGCTGTAGATAGAAGTATAGTCACTTAAGGAGTAGTTCACCCAACGATAGAAAGTTATGGGATATTTACTCAAAAATAGAAAGTTATGGgacatttcacccaaaaatggaaagtTATGGGATatttcacccaaaaatggaaagtTATGGgacatttcacccaaaaatggaaagtTATGGgatattttacccaaaaatggaaaattatgggatagctcacccaaaaaaatgGAAAGTTAGGGGATAATTTCCCTAAAAATGGAAAGTTATGTGATATTTCACCCAGAAATGGAAAGttatgggatagttcacccaaccaTGAAAactgtgtcatcatttacttacactaAACTGcttcaaaacttttcaaaattttgttcttctgttgaaaacaaaggaagatattctgaagaatgttggaaagagGAGCTATTTACCTTTATAACAGGGAcacaaaatactatggaagtcaatggctgttttttttttttcttcttgtattcttcaaaatattttctttgtgtTCGACAGAGAAggaaacacaaacaggtttggaacaagtagaggatgaataATCGACAACAGACTTTTAGTTTTTGGGTAAACTCACCGGAAGTATTTCCATGCTTTTAAGAGTTTCATTTTTGGTCAAATGCAaaggaaaatatttagaaaaatgttggaaactaaaCCAGTAACCACAGGCCATTGACCTACATATGGTTtctaatgttattaaaaaatgtttccatCCAATAGAAGAAGGAAATGAACACCggtttggaaaaagtgaatgATGGTTAAATGATGGTAGAAAGCGGATTTCTAAATTCACATTAAGAACTTATAAAATTTCCCAATTACTCTCAATATAAATGAACACtttgaataatttacatttttggggaaaaaatatatctTCATTCAAATAAATTTCACTAGTTTGTTTTCCTGATATTAAACCtaccaagtgtgaacacacctttAGACTTCTTCTTCTCATCAGGTTTTGTGAAAAATCACAATTATTCATCTTCATACATTAATATGATTGACTTTCTACAAATAAAAGTTGGTCACTTCATcattaaccaaaacaaaacatcaaaactaAAAGTGTGCAAAGAGAAACAAAGGCATCTGCCTCAGTGTAGAAGACAGTGAAGATCGACTGATCTGCAATTGTAGGCAAACTTAAGCAGGATAAGACCGTGTGAAAGGGGTCAAGAGGGATGAGGTAGGGGGGTTTAAAGTGTTCTGTTGTACCAGAGGGAAAAGCAGAAGGCTCCCAAACTGCTGTAAAAGGCAATTTAAGTTTTACAGAATGtacaaaaaaggaaaataaagaacATCCAGATGTTGCACATTCATTTGCAAGAGGAATATGAGAGAAATCTTCTCTTTTGGAAGATACAAATCTATTTCAAACtttcagcatatatacacacacacacatctgtttttGGCCATTCAACTTAATCTCCAAATATCACTTCTGTTTTAAAGAAAGCAGCATTGTattctaaattaaaacattaaataaaggaaACATCTGTGCTATAATGTGCCACAAAGGTGTCACTGATGGTGCAGTTAGTGTTAGCATTATTGTCTTCATATATGTCACAGTTTTGTTATTCTcatatttataatgtgctcacAGTTTACATTCACTCTGGAAATCTGAGCCTGTGGAACCTCCGGCACTAATAAAGCCACAATTACTGCCACACAAAATCCCATTAACAagctgtattattataattattttcttcTCTTGTACGTGGTCGGGTGTGCTTCTGTTTTACAGAATAGCCCGCTTGTTCCATGCTCGATTAAAGCAAATTTGTAATTAAGCTCATTAAAAGCAAAGCCCTAAATAAATACTTTGGCTCCCACAGCGATGGGGTACTTCCTTGTGTGCTTGAGGCATTTCCCAACCGTCCATTAGAGTCCTTCTCGCTTTTTGTTCCCTGGTCGAggctttttcttttccttttcgcTTTGTAGTGATTGCATTTAGTGTTCATATTTacatcgttttttttttgtttttttttgatgatgatgatgaaaatgtgcaTGTCTCTTCAGGCTAAAGAATCAAACCTCATTGTAGTGTGcttacatctgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024746 lncRNA upstream 16475 43543883 ~ 43544929 (+) False XLOC_011661
TCONS_00023150 lncRNA upstream 16475 43543898 ~ 43544929 (+) True XLOC_011661
TCONS_00024745 lncRNA upstream 22894 43533795 ~ 43538510 (+) True XLOC_011660
TCONS_00024744 lncRNA upstream 41104 43519604 ~ 43520300 (+) True XLOC_011659
TCONS_00023147 lncRNA upstream 85642 43469144 ~ 43475762 (+) True XLOC_011657
TCONS_00024750 lncRNA downstream 76081 43641817 ~ 43645960 (+) True XLOC_011665
TCONS_00024751 lncRNA downstream 277846 43843582 ~ 43850100 (+) True XLOC_011667
TCONS_00023159 lncRNA downstream 298020 43863756 ~ 43874284 (+) False XLOC_011668
TCONS_00024752 lncRNA downstream 438385 44004121 ~ 44007838 (+) True XLOC_011672
TCONS_00023178 lncRNA downstream 683714 44249450 ~ 44255927 (+) False XLOC_011675
TCONS_00023149 mRNA upstream 57301 43486436 ~ 43504103 (+) True XLOC_011658
TCONS_00023148 mRNA upstream 58061 43486436 ~ 43503343 (+) False XLOC_011658
TCONS_00023146 mRNA upstream 85124 43468732 ~ 43476280 (+) False XLOC_011657
TCONS_00023144 mRNA upstream 525113 43032529 ~ 43036291 (+) False XLOC_011655
TCONS_00023151 mRNA downstream 29956 43595692 ~ 43613566 (+) True XLOC_011663
TCONS_00023152 mRNA downstream 57862 43623598 ~ 43638693 (+) False XLOC_011664
TCONS_00023153 mRNA downstream 63272 43629008 ~ 43633392 (+) False XLOC_011664
TCONS_00023154 mRNA downstream 63272 43629008 ~ 43638443 (+) True XLOC_011664
TCONS_00023155 mRNA downstream 94204 43659940 ~ 43661745 (+) True XLOC_011666
TCONS_00023133 other upstream 1801479 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023121 other upstream 3775492 39785815 ~ 39785912 (+) True XLOC_011630
TCONS_00023120 other upstream 3782660 39778647 ~ 39778744 (+) True XLOC_011629
TCONS_00023119 other upstream 3789819 39771488 ~ 39771585 (+) False XLOC_011629
TCONS_00023114 other upstream 3868708 39692582 ~ 39692696 (+) True XLOC_011626
TCONS_00023158 other downstream 297996 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023173 other downstream 376201 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023179 other downstream 725669 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023189 other downstream 1444307 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023200 other downstream 1830358 45396094 ~ 45402959 (+) True XLOC_011692