RNA id: TCONS_00000195


Basic Information

Item Value
RNA id TCONS_00000195
length 3781
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_000103
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8662530 ~ 8670486 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGAGCTCCAGCATGTCTTCAGAGGGAATAGGCGAGACGCTGGTGATTCGGTTCGGCCTGATAAATGCCGATAACAAATATCTGACAGCGGAGATGTTTGGTTTTAAAATCAACGCCTCCGCGAGCTCAATGAAGAAGAAGCAGGTGTGGACGCTGGAGCAGTCCGGGGACCACGGAGACTCCAATGCTGTGTTCATCAAAAGCCACTTGGGTCGATACCTCGCCTCCGACAAGGACGGCAAGGTGACCGCAGACAGCGAGCAGCCCGGCCCGGACTGTCGGTTCCTCGTGATCGCCCACGACGACGGCCGGTGGTCCCTGCAGTCCGAGCCCCACGCGCGCTACCTGGGCGGGACCGAGGACCGGATCGCGTGCTTTGCGCAAAGCATCTCTCCTGCGGAGAAGTGGAACGTGCACCTGGCCGTGCACCCGCAGGTCAACGTGTACAGCATCGCGCGCAAACGGTACGCGCACCTGTGCGCCGATAGGAATGAGCTCGCCGTAGACCGCGACGTGCCGTGGGGTGTGGACTCGCTGCTCACACTCGTGTATCTGGACCACCGCTATCACCTGCAGACCGCTGACAACCGCTTCCTCTCGTGCGGCGGAACCCTGACAGCCAAACCAGACCGGGACACCGGCTTCACGCTGGAATTCCGCGCGGGTAAGGTGGCTTTCCGAGACGCCACGGGAAAATACATCGCGCCTACGGGCCCCACCGGGACCATGAAGTCGGGCAGGAGCGCGCGTGTTGGCAAAGATGAGTTGTTTGTCCTCGAGCAAAGTCACGGGCAAGTGGTGCTCACCGCCAGCAATGACAGAAACATCTCCATGCGCCAGGGAGTTgatttatcagccaatcaggatgAGGAGTCTGATCAGGAGGTGTTTCAGATGGAGATGGACAGAGAGAGCAAGCGCTGTGCCTTCAGGTCTTTCAATGGGAGATACTGGAGTCTCACCTCGAGTGGAGCCATCCAGTGCTCTGCTTTAACCAAATCTCCCAGTTGTTTCTTCGACCTGGAGTGGAAGGGCTCAAAAGTGGCACTGAAGGCCAGCAATGGCAAATATCTGGCAGCCAAGAAGAACGGACAGCTGGCAGCCGCGGTGGACTCTGCAGGCGAGCAGGAGGAGTTTGTGTTGAAGCTCATCAACAGGCCGCTGATTGTGTTGCGCGGTGAACATGGCTTTATTGGCTGCCGCAAACAAGGAACCGGTACACTCGATTCCAACCGATCTTCCTATGATGTCTTCCAGTTAGAGTACAACAACAATGCATACAGCCTCAGAGACTCCGTGGGGAAGTACTGGACGGTGGAGTCAGACGGCTCTGTGATCAGCAGTGGTGCGGCTCCTGTCTATTTCCACTTTGAGTTCTGCGATTTTAACAAAGTGGCTATTAAGACGAAGGAGGGCAAATATCTTAAGGGAGACCACGCTGGAGTGCTGAAAGCCAGCGCTCAGGGGATTGCTGATGCCACATTGTGGGAATACTGAGAAACATTTATGAAGccacacagacaaacaaatgtGTGCTCCTTTCAATATTCCAACTAAACACATCCTCTATAGCACAAGCAGACAGTCGTCATATCACACAACACAATTACATTACATCTCAACATAAGTCTTCAAGGcacaaaaacacatttgaatGTAAAAgtacaaacaaatgcacaaacgATTTGTCTTtggtttaaaggggtagttcactcagaaatctacattctgtttttatttttttttcaaacttgaGAATCACAAATCAAGATATGTTTACttttatggagccagatcagtctcaaaaataatacgtttgcaaaatacaattcatacacaattcacatttacaacatgtaatttgtaaatttaaaaggCAATTCTTTAATACACAattccaattcataaatttaaaacacgactcgtaaatacacaaatccaattaataaattcaaaacaagattcgtaaatacacaaaacacaattaatctaattaaaacactattcgtaaatacacaaaacacaattcgtaaattaaaaacacgacTCGTAAATACACAATTCAtatattcaaaacatgattcgtaaatacacaattcatattttcaaaacatgattcgtaaatacacgaaacacaattcgtaaattcaaaacacaatttgtaaattcaaaacacaatttgtaaactcaaaacatgatttataaatacacaaaacacaactcgaaaacataatttgtaaattcaaaacacgactcttaaatgcacaaatccaattaataaattcaaaacatgattcgtaaatacacaaaacacaactaatctattcaaaacacaattcgtaaatacacaaaacacaattcataaattcaaaagacGGTTTGTAAATGAAGAAAacgcaattcataaattcaaaacacagtttttaactacacaaatccaattcgtaaattcaaaacatgatttataaatacacaaatccaattcgtaaattgaaaacacaattcgtaaatacacaaaacacaattcgtaaaatCAAAACAGTTCATAACTATGCAAAACATAATTACAAAATtttaaacacaattcataaatatacaaaccCAATTAGTAAATTCTAAGCACAATTTGTTTGTAAATGCACACATCCAATTCAGTTGgggaaatatttatttgtgtttatgattttatgaaacatttacagtatgatttgtaaaattgtgtttagatttttacaaattggatttgtgtatttacgaattgtgttttgaaattactAACTAGATTTTGTAGATTTGAATTATGCTGTGCATGTACAGTatgagttttgtttttgcatattatttttgagactgatctggctccatactttTTTCCATAatcgttttttgttgttgtttcaaaTAAAGAAAGTTAATTCATGTTTGGAATGATGcgaggaaatgatgacagaatgtttacTTTTAGGTaaactggccctttaagagaagCACAAgctatagtatttttaaaattattgtcACACAAACTCCTAATGTGCTTTGCTCAATAACAGATTAAGATAAGTTCCTAAAAAGGAGAAATACTAATTTAGACTAAGCAATTGAATGCACTTTGTATATAGGCTCATGCAAAGTCACTGTGTCTGCCTCCCAGGGGCTTTCATGGCCTTATTTTACTCAATAGCTGCTTCTAAGAAATTCAAAATCTAGATGTTGTTACATAATGGACAATAATTTGCTTATGTAAAATGGGCGTAGATCCGTGTCTCATAAGCTGAGCCTTTGGCCATAGGTTTTGTTCTTGCTCCCAAAAACATTTTTAGCGTGAGCTGGCGTCTGTAATGAGGCCAGGATTTAAATAGCAGCATCACGGCTCagaaaatacaggagaaaaatACACGTTCACATTAGAGAGATTcagacttcacacacacacactcaaaagcaAATCATTTGTCTGTCAATTTTGTAGTGTTTGTGGCCATTTTCAATGACAAGATTTGTATTCAGCGCTGTTCTGGCTACAGGAACTAAAGCGCTTTTTTAATGTAACTCCGGCTTATTGTTGATAACATGTTGATTTGCACTCTTTTTCGGCTAAAGCTTTTTCATGTGAAAGTGTTGAAGATTAAGATGAAGTGTTTGTGCCTTCCTTGGTGAGGTCAGATCCCCTAAGGTGTGAAAATGCAGTTAtttgaacttttttatttcttattttattctcATCATGTGTCATTTGCAACTGGATATGAcaatgaaactaataaaaatgtcagaAAGT

Function

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120507-1 Predicted to enable actin filament binding activity and protein-macromolecule adaptor activity. Predicted to act upstream of or within actin filament organization and cell migration. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in brain and telencephalon. Orthologous to human FSCN1 (fascin actin-bundling protein 1).

Ensembl:

ensembl_id ENSDART00000054989

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000192 lncRNA upstream 71894 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00003027 lncRNA upstream 71894 8587345 ~ 8590636 (+) False XLOC_000100
TCONS_00003028 lncRNA upstream 71894 8588232 ~ 8590636 (+) True XLOC_000100
TCONS_00000190 lncRNA upstream 85256 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00003026 lncRNA upstream 87473 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000197 lncRNA downstream 23805 8694291 ~ 8699111 (+) True XLOC_000104
TCONS_00003029 lncRNA downstream 280388 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00000198 lncRNA downstream 280388 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00003030 lncRNA downstream 290518 8961004 ~ 8965939 (+) True XLOC_000105
TCONS_00003031 lncRNA downstream 296993 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00000194 mRNA upstream 51966 8601935 ~ 8610564 (+) True XLOC_000102
TCONS_00000193 mRNA upstream 65515 8593560 ~ 8597015 (+) True XLOC_000101
TCONS_00000191 mRNA upstream 76464 8579197 ~ 8586066 (+) True XLOC_000099
TCONS_00000189 mRNA upstream 122480 8534698 ~ 8540050 (+) True XLOC_000096
TCONS_00000187 mRNA upstream 130521 8521323 ~ 8532009 (+) False XLOC_000095
TCONS_00000196 mRNA downstream 23710 8694196 ~ 8702684 (+) False XLOC_000104
TCONS_00000199 mRNA downstream 313582 8984068 ~ 8988504 (+) False XLOC_000107
TCONS_00000200 mRNA downstream 315652 8986138 ~ 8988504 (+) True XLOC_000107
TCONS_00000201 mRNA downstream 334233 9004719 ~ 9064912 (+) False XLOC_000108
TCONS_00000202 mRNA downstream 334266 9004752 ~ 9044347 (+) True XLOC_000108
TCONS_00000154 other upstream 1598587 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 1874726 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 2476998 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 3160446 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 3212086 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 483608 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 484507 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 548162 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 1381288 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 1381298 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00486146_00492357.mRNA True 2216 mRNA 0.50 5 CI01000300 485894 ~ 492836 (+)