RNA id: TCONS_00023163


Basic Information

Item Value
RNA id TCONS_00023163
length 942
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_011668
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 43863708 ~ 43888569 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatactGTTTCTTTCGTGCAGATTTAAAACAAGATTCCTCAGCAATAGAATTGCATCTTCTTCAGCAGATGGGTTACAGCACTTCTCTTGTCTCTTCTCTTGACTCTCTCAAACTGTAGGTGATTCTTCagcatatgtgaccctggaccataaAATCAGGGACAATGAAGCTCCTGGTTGTGGCTGCTCTTGTAGGACTGTGTCTTTCCCAGCACAACACTAACTTTAAACATAACCGGACGTCCATCGTTCATCTGTTTGAATGGCGTTGGGCAGATATAGCTAAAGAATGCGAGAGATACCTGGCACCAAACGGCTATGGAGGAGTACAGATCTCTCCTCCCAGTGAAAGTATTGTGCTGACAAAACCTTGGCATCCTTGGTGGCAGAGATATCAGCCAATCAGCTACAACCTGTGCTCCAGATCAGGAACTGAGGAAGAGCTGAAGGATATGATCGCACGCTGTAACAATGTTGGGGTGAACATATATGCAGATGCAGTGATCAATCACATGTGTGGAGCTTCTGGTGGAGAAGGCACTCACTCCAGCTGTGGAACATACTTTAATGCAAAGAATGAGGACTTCCCCTCTGTCCCATACTCATCATGGGACTTCAACGATAATAAATGCAAAACCGCCAATGAAGACATTGAAAACTACAGTGATATTTTCCAGgtCAGAGATTGCCGCTTGGTTAGTCTGCTGGATCTGGCCCTGGAGAAGGACTATGTTAGGGGAAAAGTGGCTGAATACATGAACAAGCTGATTGACATCGGTGTTGCTGGATTCAGAGTAGATGCTTGTAAACACATGTGGCCTGGTGATCTCAGTAATGTCTACAGCAGACTCAAGACCCTGAACACTACTTGGTTTTCTCCAGGCACCAAGCCCTTTATTTATCAAGAGGTTATCGACTTGGGTGGGGAACCTATTAAAGCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0103025 alpha-amylase activity (releasing maltohexaose) molecular_function
GO:0004556 alpha-amylase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1606 Predicted to enable alpha-amylase activity; alpha-amylase activity (releasing maltohexaose); and metal ion binding activity. Acts upstream of or within cellular response to estrogen stimulus. Is expressed in digestive system; endocrine system; gut; lens; and pancreas. Orthologous to human AMY1C (amylase alpha 1C); AMY2A (amylase alpha 2A); and AMY2B (amylase alpha 2B).

Ensembl:

ensembl_id ENSDART00000132673

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024751 lncRNA upstream 17789 43843582 ~ 43850100 (+) True XLOC_011667
TCONS_00024750 lncRNA upstream 221929 43641817 ~ 43645960 (+) True XLOC_011665
TCONS_00024749 lncRNA upstream 302153 43561404 ~ 43565736 (+) False XLOC_011662
TCONS_00024752 lncRNA downstream 129839 44004121 ~ 44007838 (+) True XLOC_011672
TCONS_00023178 lncRNA downstream 375168 44249450 ~ 44255927 (+) False XLOC_011675
TCONS_00024753 lncRNA downstream 375327 44249609 ~ 44255927 (+) False XLOC_011675
TCONS_00024754 lncRNA downstream 375543 44249825 ~ 44255927 (+) False XLOC_011675
TCONS_00024755 lncRNA downstream 375894 44250176 ~ 44255927 (+) True XLOC_011675
TCONS_00023156 mRNA upstream 18486 43843536 ~ 43849403 (+) False XLOC_011667
TCONS_00023155 mRNA upstream 206144 43659940 ~ 43661745 (+) True XLOC_011666
TCONS_00023152 mRNA upstream 229196 43623598 ~ 43638693 (+) False XLOC_011664
TCONS_00023166 mRNA downstream 15089 43889371 ~ 43920385 (+) False XLOC_011669
TCONS_00023167 mRNA downstream 15227 43889509 ~ 43895523 (+) False XLOC_011669
TCONS_00023168 mRNA downstream 16454 43890736 ~ 43919671 (+) False XLOC_011669
TCONS_00023169 mRNA downstream 20876 43895158 ~ 43919671 (+) False XLOC_011669
TCONS_00023170 mRNA downstream 34146 43908428 ~ 43915695 (+) True XLOC_011669
TCONS_00023133 other upstream 2107964 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023121 other upstream 4081977 39785815 ~ 39785912 (+) True XLOC_011630
TCONS_00023120 other upstream 4089145 39778647 ~ 39778744 (+) True XLOC_011629
TCONS_00023119 other upstream 4096304 39771488 ~ 39771585 (+) False XLOC_011629
TCONS_00023114 other upstream 4175193 39692582 ~ 39692696 (+) True XLOC_011626
TCONS_00023173 other downstream 67655 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023179 other downstream 417123 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023189 other downstream 1135761 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023200 other downstream 1521812 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023207 other downstream 1598372 45472654 ~ 45475249 (+) False XLOC_011696

Expression Profile

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