RNA id: TCONS_00024752


Basic Information

Item Value
RNA id TCONS_00024752
length 3521
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_011672
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44004121 ~ 44007838 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttatttcattatttttattattataggtaGTAGTACaacagctcagggatgagcttttttgaTGGAACAGTtgtaaatgaatgtttttctttttttttatcaaattcatcaAATAATCGAAAACAtaatcaacagattaatcaattattaaaataaccgTTAGTTGCAGCCGTAATTATAACAAATGTAAGATACATTACTTGGAGTACATTTCATATACATGTCCACCTGAAAGCGATCACCCAGCAAAACACTGACAAAAACGCTTCTGTGTTTACAAAAGGAAACCTAAGAAAAAAGCGCACTGTGGCCACATGGTTTTACCTTTCTTTTATTGGTATTGTGGACCTGTGCTTTACAAGACTCAACCTTGAGAACTTTTCAACACCGTACAAGGTGTGTTACTGTCCAAACTGTAAAAGTTGTGCATATGGCGGTAGACAGTGAGAAAAATGTATTCGATTTCAAATCCGTCCTAAGACATACTTTATATgctgttgtgcaaagaactgcacaaaaaacaattatttcattGTTGATATGCCCCAGTAAGTATCATCAAGCGTGAAATAGAACAAAAGTTGTTGTAGTTGTACTTCTCTGTGGTGTACATCTTGCctacaaactgcagtcaaacatgtTTAAACCACAAACCATAACATATTTACCATTAGCATTTTTGTACCcttagcccttgaaacagagtgtgaagggttCCAAAATGTACCCCAAAGAATTGGGACAGCATTACAACACCTGCACAAGTCATTATGTCTCTCGATCTCTTCATATGAAATAGACGATggagactgctgtagttatttcagttgtgttcttttttttttttggtgtttatcttcaggaaattactAAAGACATAAATCATGTTATCATAAAGATTtcatgtggcaataagattgtaactatacAGTGCACTTACATGCATATTCATCTAAAcccatgaaaacaacattaacattatagcagtcATTGCCAGCTACTAGACCTCTCTGACGGGAATCAAGTGTCATTGAGTGACAGATGGAAAAgcatgttgtgggactgctatacaggagttattatgaATTATAGAAAGCcatgaaggggaagggctaagGGGTAGATTTTGGATTAGGCCTTTCTCCCCTGGCACCATTGAAACAGATGTTTGGCACTGGCATGGACCAACCAAAGGTGACTCATGCGAACTTTCATTGTTCCTTTTCTATACAAGGTATTATTTAGTCTTACACTCAGAAATGTTTGccgtttgtttaaactacttatttaaaatgagctgaaacaacaaaatgcTTGAGTTGTTTTAAGGGATAACTGTTTAATTTAATCcagttaaatttgtaaaaactcgattgtgtggaacccaacatttttttacacTACGAGTGATCCACTTTCAATCTtgccattacattttttttcttgtctgttcATATTTTGAACATTTACTGATTCATACatgatttttgtattttctaATACCTCCTTCCCTGACCTTTTCCCAGTTTTATTGAGACTATTTTACTGTGTGATGTCTCTCTTGCTTATTTGTCTGCTTTTGTATTCCATTCACTCCCTAGTGTGCAGATACCCAGCATTTATTCCACCTCGTGCTTATTCACTTATTCATCTTTGCCAAAATGACATGGCATATCAATTTCTGTACAGATACAAAATGTAAATGAAACCAATATATAGTGTCAGTGAAGTTTAAATTTGGGTTTTGCTCTTGACCTAAAACTGTACCCGTTTAACACTATTAGCCAACTATTATATatactagttaaaaaaaaaacctcatcaCCAGTTTTCATGTTTTGATGGTTGCAAATGACCAGGTAAGAGATATCAGAGGTGGACCCCTCACCATAATTCTCTATATATTAAAACCCCCAATAGCTACATCTTAAAAGGCGTTACATATGAAATCTCATGAATATAAAGAACAATTACCTTCAACGCATTCAACCAATTCTTTGCTTTCTTGCTTGCTTTTATGCAAAATATGTAGCAAACTATAACACCATAATTGCTGTGAACGGTCATACAAGCATTGATTGTGGTTGTGATCAACTCGGAGCCATAATGTGGCCACATATGTCCAGGGGATATCCTGGGTTATTAAACGATTAGGCTGCGCAACAAATATAACTACACACACGTACGTCAGCACTTTCATTCTGTTGTTGACAGCAACACAGTAGCATTTTTGAAACaagtttattttcacatttatttgaaGCACTTTTAAGGACCTATGTGTGTTTTCAAGTTCTTCCTATGCCTTCCAGGAATCAATGAGTCTGAGATTCAAGTACTTTCTGTATCAGAATCCTGagcaatacatgtttcacattgtccacagcctaAGATTTTCTCTCCTGGCTTCACTGAAACGGACGGTTGGCATTCGCATGAGTCaaccaaaggtttggctataggAAACTGCCCATatatattgaccctgtggagctcccgccgaacagttttggtggaaaccgGAGATTTGAGGTGCACATTTAACTCTGCTGTGAATTGGGCAGCTGTGGTTACATGGTTTTTAGATACAATCCGGGTTAGCACGCggacatccctttcagacagcttcctcttaCTTCCACAGTTattcctgttggatgtggttcgTCCTTCTTGGATGTATGCTGATGTTACTCTGGATACTGTGGCTCTTGATACACCACAAAGATCTGCTGCCTTGGTCACAGATGCACCAGAGAGACGTGCACCAACAATTTGTCCTCTTGTGAACTCTGATGTGTCACCCATAATGCTGTGTGTTggaatattttaagcaaaactgtgctattactcCACTAATCAAATCTTCACACGGTGCTCTTACAAGTGGAACTGTCTTGTTCCAGGACACAAATACAGCTGGTCTTTGAGCAGCAGTCTGAGGTCCTTTGTTGTGCGATGAATCCTCCAAGCCTCAGTCTTTAGTGCATGTTGGGGAATTATTATGCTGCTGATTTATGACTCTTGAACGTATGCGTGGTTctataataaacaaatgaacttaATCAGTAAAAGAACCACATTGTTGTGCAGAATACAACAAAAAGGTACTGCTAcagttagggctgtgcgattaatcccATCACAATTTGAAACGTTGTGATTAGCCAAAATTGCAAGAGACTGCaatatgaaatatgtattatttaaacttcccccgcccagagcaaatgcgtgactgccatatgtgtgtgacagtcttatgctgtgttcacaccagacgcggaaggagcgtcaagcgcgagtaatttacgtgttaaagggtcacgaaacaccaaaacattttttgagctgttgacagtcgtatatgtgtcccacactgctaaaaacactattaggacacctatatttcactaaaaagtgtaaattggttgtttttgcgttatttcaagcaaattcgtacttttgGATTTTCGTACttttccggtttgaaacaaatttttgaagctgcgtcacggt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023159 lncRNA upstream 129837 43863756 ~ 43874284 (+) False XLOC_011668
TCONS_00024751 lncRNA upstream 154021 43843582 ~ 43850100 (+) True XLOC_011667
TCONS_00024750 lncRNA upstream 358161 43641817 ~ 43645960 (+) True XLOC_011665
TCONS_00024749 lncRNA upstream 438385 43561404 ~ 43565736 (+) False XLOC_011662
TCONS_00023178 lncRNA downstream 241612 44249450 ~ 44255927 (+) False XLOC_011675
TCONS_00024753 lncRNA downstream 241771 44249609 ~ 44255927 (+) False XLOC_011675
TCONS_00024754 lncRNA downstream 241987 44249825 ~ 44255927 (+) False XLOC_011675
TCONS_00024755 lncRNA downstream 242338 44250176 ~ 44255927 (+) True XLOC_011675
TCONS_00024756 lncRNA downstream 250213 44258051 ~ 44262819 (+) True XLOC_011676
TCONS_00023171 mRNA upstream 2089 43926523 ~ 44002032 (+) False XLOC_011670
TCONS_00023172 mRNA upstream 2104 43926560 ~ 44002017 (+) False XLOC_011670
TCONS_00023174 mRNA upstream 2609 43946269 ~ 44001512 (+) True XLOC_011670
TCONS_00023166 mRNA upstream 83736 43889371 ~ 43920385 (+) False XLOC_011669
TCONS_00023168 mRNA upstream 84450 43890736 ~ 43919671 (+) False XLOC_011669
TCONS_00023175 mRNA downstream 22854 44030692 ~ 44080733 (+) True XLOC_011673
TCONS_00023176 mRNA downstream 107603 44115441 ~ 44194885 (+) False XLOC_011674
TCONS_00023177 mRNA downstream 107646 44115484 ~ 44191944 (+) True XLOC_011674
TCONS_00023180 mRNA downstream 433204 44441042 ~ 44454022 (+) True XLOC_011679
TCONS_00023181 mRNA downstream 455392 44463230 ~ 44476712 (+) True XLOC_011680
TCONS_00023173 other upstream 62070 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023158 other upstream 129837 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023133 other upstream 2244196 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023121 other upstream 4218209 39785815 ~ 39785912 (+) True XLOC_011630
TCONS_00023120 other upstream 4225377 39778647 ~ 39778744 (+) True XLOC_011629
TCONS_00023179 other downstream 283567 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023189 other downstream 1002205 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023200 other downstream 1388256 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023207 other downstream 1464816 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023216 other downstream 1631504 45639342 ~ 45646531 (+) True XLOC_011699

Expression Profile

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