RNA id: TCONS_00023178


Basic Information

Item Value
RNA id TCONS_00023178
length 4689
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id XLOC_011675
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44249450 ~ 44255927 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCCGATAGCGAATACAGCTctaaattattagaaaaatattCATAACATCAGGATAATATCCTTTTCTTCAAACCGTGAAGCAAATGAGCTATGATGAAGCGTCTACTGCTAAACACGAAGAATGGATAAAATGGTTTTGAGAGATTAAAGCACATACGGTTATGATTCGCTGCTCTTCTGGGTTGAAGTTGCTGGAGTCTGATTTGTACAGCGCGCTGGCCAATGAAGAGCTCAGGACTGGAGTCTGTTTCTCTCGCAGGGCCCTTTGCAGGGAAACAAATGTCGACAGCTACTTTTTGATGCAAACTCTCCAGCCAATGAGAGCGAGGCCCTGGCGGAGCGCATTCTCATCTCTCACAGTGCAAGCAATGTCAGTTTATGTTGTAACATTAACTCGTAGCGTTATGATTAAAGTGGAAAGAAGAACTATTTCTTAGTTTTTACACTCCTTTCGTtaaaaattgaattttttttgtttgcttgatgTAGAATGTGCAGATGCGGTGACCCCTGGTAAATAAATGCAAGTTTGTATTCGTACCACTCCAAAAAAGTTGCATAGGCAacagcagtattatttatataatctCAGACATAATTACCAATCCCAAGAGAAAACAGCAGACTTAATCTTTAATTATTTCACAAATATAACACCGGGGATAAATCCGGAGAAAACAAATGTTGAATACGGACGCAGGCAGAGCTCTTGCATTTGTGTTGCGTAGCTGGAGGGATTTACGGGGACTTAATTCCTTAAAACTGTCCTCTCGTCCACATGACGCTCAAACTGCAAGTGCTCAAGCTGATATACCCAAACGTATCAAGAGATGAGTGCACCGCATAGCCATGGGGCTAGATTAGGGCCTTTTATAAGACATGTAGAATACACGTGAAACCAGTGTGGAGTGGCGCAACGAGGAGGTGAATTTGGTACCTTGaaaaatgttcaaaacaacaCGTTGCCAATATTCACTTCGAGAAATGTCTATCTGGATTCTTCTGTGTGGGAGGAAAGCCGACTCTATCATAACAGCTTTAAGACTATACATTTAAGATATCCTGAGAAGTAGGGAACCTGACAAGCACCCGGGTGACTCGAGAAGCACGGACAAATGAACTACGATACAcacagagagagggaaaaaaacttcaactCTTCAAGACAAGATAGAAAGCTTCAGTTGTGCACCTGCTATTGTGGAATGCCCTGCAGACGATGACAGCCACCATTATCCTGGTCCAAATGTTTTGCAAGCTCTGGTGGGCAAAAGCAAAGTGGACATCATCTGATGTTATCTTGTGTGAATGTTTGGAGGAGCACAGTTGGAGAGGATCAGTTTCTTTACAGTTTTAGATTAGAGCGTCTTTAGTGTCTTTTCAGTTATTTTGCACTTTGTTTGATTGatgaaaaacaaaaccaaaaaaagaggattttcttttattattttgtctGACCGGTGAGTTAcctgtttttcttttataatcTATTGAGATGTGAAGATTACATCAAAACTACAGCCATGGTTGAATGGACGTAATTTAACATGATGGATTACAAATGAACCCGCTATAATATTCCTCTAAATGTTTCTCTGATTTGACATAATTGTGACAGTGTTTAAATGCGATAACAGAGTCATTTTTGATGAGAGCTTGAACACTTGAATGTGAAGGTATATTTGCACAGAGTAATTACTATGAATAAAGGAGCTCGTTTGATCTTTATTGACATTCATAATTTCCTTCCCGTAAGGTACAGGAAACTTAAATGGGGTTAAATGTTACGCGTCACGGTCCGAGAAAATAAGGATGTCAGATTGGAAGGGTGGGGGGAAACAGAGGATGATTGCACAGTACATTTCAAGAGATCACTCAGGTTACAGAGATCTACATATAGAAACAGACTGGGGATAAAGAGAAgaagagagtgtatgtgtgagagagaaaaaaatcattaaaattccTCAGTTCAACTACTCACACTGAGAAAGTAGTGTATCATGTCTGTTTAATTGTTTACACTTAATTTAGATAAATCAAGATGCTGCtttaaattagaataaaaaaatctgCTTAACTTTACAGCTAATTTCAACTTTAAgctgattttaaaaatgttttaaaaatgatgttGAAACATGGTCAacctatttaaaaaattttttttcatttgataatcctaaccttacatttttgtcattttaatgtttCTTGTACAAAAAAAGGGCTTAAAATCGGGACATAATGCATATTTATGACGCATTTAGCATCTTGTGGAAATATTTAACGGTTATTAATCACTACTGTAATTGTTTGTCTGCCGTTTGCACAGGGGCCAAGCAGCAAACAAATGGATTCAATTAAAAGCCATCCTTCCCTTCAAGTCATCAATATGAGGCAAAGTAAGCCCTCCACCAAACTGACAAGGACAAACAAGTACACACAAGGGGACACTAAACGTTCTTTCAGTCATGCATAAACATGCTTTTCTCTCTGCGCTCTTGCTCTCACTcactttcatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatacaaagGGCCTCAAGGTGAACTTGGTGTAAGATCTACACTCAGATGTGCAATTGCTCCAAATGAACAACCTTTCCAATTGAACATATTCCGCAAAGGAAGATCTATATTTTGTGAAGCGTGCAAGGTGTGAGGTGTGTGTTGTGCGGTGGATCCTGCCCTGCAGTGTGGGCTTCGCTTCTTTTGCCTCTCACAGTTCAAAGGCAAAGGAACAGAGAGGGTCGGATTTATTCAGGCTTTATGTGCTAAATGCTTGGATGCCTTTCTTGTAGTCTGCAAGGCCCTAAGATCACATTTAGGAAACATGCTATTGTGAGGTTGGCTGTGAAATCCCCATAATAAATTCACCAAACAGGCACAAGCAATGGCTATTTATGATCGTAGCCATTTTTTTTGCCTTCCAGGTAAAGGTGTGTCTGTTTATGCATCGCTTGTAGACTCGCAGTGCTACAAACATGAGTTAAATGCACATGAAAGGATGGTAGATATACATTCAAATAGGCTCTTATTGAAACATTCAATACAAACTGAATTGACAGATAGTTCACCTTCAGAAATGGAAATTTTGACAccctcatattattattattttttcaacgGAAGTTATTTTGGAAACTGCCTCAgtgtttttgtccattttttaatCACCTGAACGGGCAGAAAGAGTGgaagtgttttatttaataatttttaaagtatATGTTGAAGAAATGAAGTCATACACTTTTGAAATGGCATTGTGGTGAAAATTAAAACATCTTATAGACGTGGAACCCTGaacatccataaacacttttAATTAGACAAAATGTTCTTAAGAAATGGACATAAAAGTTATTCACAATAAGAAAACAATAGTTTGTCAAAGGAAATGTTTAAATTCCTTTGGCATTGCTGCACAAAAAATTGGTGAcaagttttgagtgaactatccctttaagaagtgATATAACAATCAAGTTTTTATTTTGTCACTCAGCCAACTTTTGAGCACCCTTCCCTGAATATGCACGCTAACATTAGCGAGTCTTTAATTATGTGATATAATTAACCCTGCACCCAGTCTGAAAGGCATGTGAGTCGAGGACGAGCCCCCATATGGGGTGAGCATTCCTTGCTTTTGCCCCGTCCAAACCCCACTTTGTTTTGAGTGACATTCTGGCATTCTTGTTCATACACCAATATCAGCCTCCAAATTGTACCGTCTTGCTGTCTCATACACTGCCAGTTCACACGCATCTCTCTCCCCACTTCTCTTTTAAATCATGCTTAGCTTTTATGCTGATGCATTTTTAAGACCATCTTCTCTTACACGTATTTTCTTTCGGTTTCTTTTCTTAGTGTCAGTTGCTCTCTGTTTATATCTCTTTTGAGAAAGTGTCTGTTGGGACTCCTCTCATAATTCTGTCAGTTGGATGTTTCCATTACGTTCTCATCACGTTCCTGCCATGTTCTTGTCCGGGCTCCAGCCTGTACTCAGCTACTCTTCCAGCCACAGGCTGGCagctggcttttttttttccacagttgtGTATCTCTAAGGGCTTGTCTGTCAACTGGAACACTCCCCTCCAATTAGGAGAGTAAACACAAGACCCGTCtgcatatgtgtgagtgtgtgtgtgtgtgtgtgtgtacttgtgtgtgtgcttgtgtatacTGTATGCTTAGAAGAACTTGACAAACTGTCTTAAACCCTTTCCACTCAAAAAAACAAATTGCACATTTTCTCTCTTTAAATTTAGACCATGCTACatccaatttttttttgatagaggGTAAATGATGCTGCATATATTGAAAGAGAATTTTACTATGCACTCATTTAACTGagttttttccttttattaaacTGTCTTGTTAACCGATAATTTACCCTAAAATAAAGATTTTCACCATTTAAACAGCATGAACTAATATACAAGgacaaatatttataaatacattctATGTAAATCAGAGGGGATCCTCAATTGATTGATTTCACaaattcttcaaaatacatttgttattcataagaGAAAACAACATTTATAGAGGTTTGGGAAATGTAAAggtaatt

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0040011 locomotion biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0061564 axon development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0042330 taxis biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024752 lncRNA upstream 241612 44004121 ~ 44007838 (+) True XLOC_011672
TCONS_00023159 lncRNA upstream 375166 43863756 ~ 43874284 (+) False XLOC_011668
TCONS_00024751 lncRNA upstream 399350 43843582 ~ 43850100 (+) True XLOC_011667
TCONS_00024750 lncRNA upstream 603490 43641817 ~ 43645960 (+) True XLOC_011665
TCONS_00024748 lncRNA upstream 683714 43561404 ~ 43565736 (+) False XLOC_011662
TCONS_00024756 lncRNA downstream 2124 44258051 ~ 44262819 (+) True XLOC_011676
TCONS_00024757 lncRNA downstream 126406 44382333 ~ 44392787 (+) True XLOC_011678
TCONS_00024758 lncRNA downstream 505697 44761624 ~ 44763410 (+) True XLOC_011683
TCONS_00023185 lncRNA downstream 524432 44780359 ~ 44834423 (+) False XLOC_011684
TCONS_00023187 lncRNA downstream 643614 44899541 ~ 44922142 (+) True XLOC_011684
TCONS_00023176 mRNA upstream 54565 44115441 ~ 44194885 (+) False XLOC_011674
TCONS_00023177 mRNA upstream 57506 44115484 ~ 44191944 (+) True XLOC_011674
TCONS_00023175 mRNA upstream 168717 44030692 ~ 44080733 (+) True XLOC_011673
TCONS_00023171 mRNA upstream 247418 43926523 ~ 44002032 (+) False XLOC_011670
TCONS_00023172 mRNA upstream 247433 43926560 ~ 44002017 (+) False XLOC_011670
TCONS_00023180 mRNA downstream 185115 44441042 ~ 44454022 (+) True XLOC_011679
TCONS_00023181 mRNA downstream 207303 44463230 ~ 44476712 (+) True XLOC_011680
TCONS_00023182 mRNA downstream 441677 44697604 ~ 44752439 (+) True XLOC_011681
TCONS_00023183 mRNA downstream 500320 44756247 ~ 44761580 (+) True XLOC_011682
TCONS_00023184 mRNA downstream 524239 44780166 ~ 44923661 (+) False XLOC_011684
TCONS_00023173 other upstream 307399 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023158 other upstream 375166 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023133 other upstream 2489525 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023121 other upstream 4463538 39785815 ~ 39785912 (+) True XLOC_011630
TCONS_00023120 other upstream 4470706 39778647 ~ 39778744 (+) True XLOC_011629
TCONS_00023179 other downstream 35478 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023189 other downstream 754116 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023200 other downstream 1140167 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023207 other downstream 1216727 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023216 other downstream 1383415 45639342 ~ 45646531 (+) True XLOC_011699

Expression Profile

//