RNA id: TCONS_00023193


Basic Information

Item Value
RNA id TCONS_00023193
length 1502
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_011686
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45106424 ~ 45114519 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGGTGTTCCATCTCATTGGTTGAACAACTTGAACTGTTATTTTCCGTGTGTACGTTCAGTACATACAGAACTGATATTTGAATAGCATGGCGGCACAAACTAAGCCTGTACTTTATGGATATTACAGAAGTTCTTGCTCCTGGAGAGTCCGGATAGCATTTGCATTGAAAGGCATTGAATATGAGCAAAAGCCGATAAATCTCATCAAGGATGGAGGGCAGCAGCTCACGGATCAGTTTAAGGCAATAAACCCAATGCAGCAAGTGCCAGCAGTGTCCATTGACGGCATCACCTTGTCTCAGTCTTTGGCCATCATCCAGTACATTGAGGAAACCCGTCCAGAGCCCCGCCTCCTGCCTGCAGACCCCATGCAGAGAGCTCATGTCCGCATCATCTGCGACATCATCGCCTCTGGGATCCAGCCTCTTCAAAATCTGTATGTGCTTCAGAAAATCGGAGAAGATAAGGTTCAGTGGGCTCAACATTTCATCAACCGAGGATTCCAGGCCCTGGAGCCTGTCCTGAAGGAGACAGCAGGAAAATACTGCGTGGGTGATGAGATCTCTATGGCAGATATTTGCCTCGTGCCTCAAGTCTACAATGCTGACAGGTTCAAGGTGGATATGACCCAGTATCCCACGATCAGAAGGTTAAATCAGACCTTGGTTGAGATCGAAGCCTTCAAGGCCAGTCACCCTTCACGTCAGCCTGATACTCCAGATGATCTGCGGCTGTAATTCTCTAGTGATCTGTAATTAAATCAGTAATAAAGCACTTTGAGAAGCATTTGTTCCAGACTGTTCATTGAAAAGGTAAGACAAATCAGTTTCTTTTCGCAAAGTGCTGCATTTATTGCTTCGGTGAAAAGACTTGAGTTGCTTTTTTTGCAACTTTCAGACATCTAAGAACATGAGGTGAGCTGTACATGTCAGTGAGAAGAAAGTGGAAGTGCAACAGAAGTCAAACATACAAAGCAAAACGTGAACAAACGTGTAAAATACGTGCTAAAGCAGAGAAAAGATTTATTGCACAAAAATACATCAAGGCTCTAAACGTGCTAAATACAAATCTACATGTGTATCTGCAAGAGCGAGTGAAGGCTTTGCTTGCGTTAAAAGAAATTCATATAAAATAAGTAGCTGTAAATCAGCTGTTCGTGCTAAAACTGCAATaatgcaacatttaaaaatacttagtctaaaagtgctttacaatgtttttgtaacctatattcattttgaaaaataaaaaaaaaaaagtctctgatCCTAAACAGGAAGCTGAACTGTACATTTAACGGTGTCGTTATAAAATGTTCCTGAACAGTCTGACCCTCCAAACATCAGGATGGCACACTGGAGAGAGGGGCTGTTGGCATGACGCCGATCTCTGGCATCCCTCAGCTCTGAAGGCTTTGTAAAGCCCAGGCTGATCAGACTGTGCCCCGCGCGGGGCTTACAACAAAGAGATGGAGACACCAGTGATGTCCAGGAGCTGCT

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0006749 glutathione metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004364 glutathione transferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016034 maleylacetoacetate isomerase activity molecular_function

KEGG:

id description
ko00350 Tyrosine metabolism
ko00643 Styrene degradation

ZFIN:

id description
ZDB-GENE-040718-184 Enables glutathione transferase activity. Predicted to be involved in L-phenylalanine catabolic process and glutathione metabolic process. Predicted to act upstream of or within tyrosine catabolic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in brain; gill; liver; and pleuroperitoneal region. Orthologous to human GSTZ1 (glutathione S-transferase zeta 1).

Ensembl:

ensembl_id ENSDART00000156971

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023187 lncRNA upstream 184564 44899541 ~ 44922142 (+) True XLOC_011684
TCONS_00023185 lncRNA upstream 272283 44780359 ~ 44834423 (+) False XLOC_011684
TCONS_00024758 lncRNA upstream 343296 44761624 ~ 44763410 (+) True XLOC_011683
TCONS_00024757 lncRNA upstream 713919 44382333 ~ 44392787 (+) True XLOC_011678
TCONS_00024756 lncRNA upstream 843887 44258051 ~ 44262819 (+) True XLOC_011676
TCONS_00023194 lncRNA downstream 63107 45177626 ~ 45180746 (+) False XLOC_011687
TCONS_00024759 lncRNA downstream 64280 45178799 ~ 45179428 (+) True XLOC_011687
TCONS_00024760 lncRNA downstream 78661 45193180 ~ 45193936 (+) False XLOC_011688
TCONS_00024498 lncRNA downstream 78680 45193199 ~ 45200531 (+) False XLOC_011688
TCONS_00023195 lncRNA downstream 85033 45199552 ~ 45200541 (+) False XLOC_011688
TCONS_00023190 mRNA upstream 76681 45010230 ~ 45030025 (+) True XLOC_011685
TCONS_00023188 mRNA upstream 77779 45009868 ~ 45028927 (+) False XLOC_011685
TCONS_00023184 mRNA upstream 183045 44780166 ~ 44923661 (+) False XLOC_011684
TCONS_00023186 mRNA upstream 184285 44833834 ~ 44922421 (+) False XLOC_011684
TCONS_00023183 mRNA upstream 345126 44756247 ~ 44761580 (+) True XLOC_011682
TCONS_00023196 mRNA downstream 144740 45259259 ~ 45302962 (+) False XLOC_011689
TCONS_00023197 mRNA downstream 144751 45259270 ~ 45263464 (+) True XLOC_011689
TCONS_00023198 mRNA downstream 191126 45305645 ~ 45346635 (+) True XLOC_011690
TCONS_00023199 mRNA downstream 281327 45395846 ~ 45402961 (+) False XLOC_011692
TCONS_00023201 mRNA downstream 290239 45404758 ~ 45410653 (+) False XLOC_011693
TCONS_00023189 other upstream 94850 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 815186 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023173 other upstream 1164655 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023158 other upstream 1232422 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023133 other upstream 3346781 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023200 other downstream 281575 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023207 other downstream 358135 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023216 other downstream 524823 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023224 other downstream 633164 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023226 other downstream 693634 45808153 ~ 45808248 (+) True XLOC_011702

Expression Profile

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