RNA id: TCONS_00023194


Basic Information

Item Value
RNA id TCONS_00023194
length 1916
lncRNA type lincRNA
GC content 0.41
exon number 4
gene id XLOC_011687
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 45177626 ~ 45180746 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttttctttttcaaataatggagcaggcagaagagggagactcacaaAAGCATTGGTGGACATGTATCTAAAAAATGCTGGAGAACAGCAGATTGGAATGGACCTCATGGAGGCAAAAAGGGAATCACagacctcagcaatgactggaaaTTGATGGTCagggattttttaaaaaaaaaaaatatatacatctgATTGACGTGTGACTCGATGGACGGCCTTCCAAGATGGAGTGGTGGTTGGTATAGATAGTAATTAGGCTTTGTCTGTGTCAGAGTTCTTTTTTTCAGGTTTTAGAGGCAGAAGCAGgcagaagaaggagactcacaaggACATCGGTGAAGAACAGCACGTAGGGCTTTGTTAGGGCTGTCTTTGTCTTTTGCAGGTTGGAGTGGAGCAGAATGAGACTCACAAGGGGAACGGTGGAGATATACTAGAAGACCTGGAGCTCAGGCAGAgggtagaactgcttgaacagactgaacAATGGAGTTAGTTTTCGAAAGAAATGTTCTGAGATTAATtaaagacctgatatctttctctttggcagattggcatggagcatgtgAAGGAAAAGAGAAACACGTCAGTAATGACAAGTACATCATGATAAATTAGgtaatggacaAACAACAGGCAGAAaaggaaactcacaagagcatctGTGGAGATTTACCTGATGAACACTGGATAACAGCTTGTGCATTTCTGGAGCTCATCAAgtatgtagagctctgttagtcatGTCTTTTTCTATTACAGACAGGAGTGCAGCATGTGGAGTAAAGTAGGAattcacacctcagcaatgactggacactgatggtcaggaATATCCTTCAAAGGCAGAAGGatgggtgcatggatggatgtccttccaggaggaagggggtggtggtgggcatagatggTTGGATAAATGTCTTgtctgtggctgttatttacattgtagGTAATGGAACAACAACAGgcagaagaaggagactcacaagcAGAATGattagactggggcatgtggagaaatgggaatcacacctcagcaatgactgcaaACTGATGGTCTGGTTGGGTATTTttcagattgatggatggatggatagattaatgAATGATGGATGGCTGGTCGGATGGTAGATGTCGTAGATACGTAGATGTCCTTCCTAGAGGAAGGGCgtggaggtgggcatagattgtacGTAGATGTCCTTCCtagaggaagggggtggaggtgggcatagattgttagatagaTGTCTTCTTTTTAGTAGGTAATTAAATTGCAGGTATTGAACACACAATAGGCAGAAaagggagactcacaagagcatcccTATTTACAAGAGCACGTGCCATCATTAATAATTTTCAGTTTAGCTATTTATATATCGGTAAATCGTTTTTGGGGGGATGGGGGGTGTTGCATGCGTTTGACGGGGGCCCGTGCCCGAAGAGAGCTTTATGTTTAGTAACACCACTGAGACTTATAAGAGGAACAGTGGAGATATACTGGAAGACCTGGAGCTCAGCAAACAGGTAGAACTGCTTAAACTGACTGAACAATGGAGTTAGTTTCCAAAGAAATGTATTAAGATCAGTTAAAGacttgatatctttctctttggcagattgGCTTGGGGTATGTGGAGGAACAGGGAAACACGTCAGTAATGACAAGTGGATCATAATAAATTAGgtactgttttacattttaagttaaatcaaatcaactttataaaacatttaaagttaaatattttaactttaactGACTAGGTGATGGTCGGGTATCTtcttcagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagattttactAAACTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194875

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023187 lncRNA upstream 255484 44899541 ~ 44922142 (+) True XLOC_011684
TCONS_00023185 lncRNA upstream 343203 44780359 ~ 44834423 (+) False XLOC_011684
TCONS_00024758 lncRNA upstream 414216 44761624 ~ 44763410 (+) True XLOC_011683
TCONS_00024757 lncRNA upstream 784839 44382333 ~ 44392787 (+) True XLOC_011678
TCONS_00024756 lncRNA upstream 914807 44258051 ~ 44262819 (+) True XLOC_011676
TCONS_00024760 lncRNA downstream 12434 45193180 ~ 45193936 (+) False XLOC_011688
TCONS_00024498 lncRNA downstream 12453 45193199 ~ 45200531 (+) False XLOC_011688
TCONS_00023195 lncRNA downstream 18806 45199552 ~ 45200541 (+) False XLOC_011688
TCONS_00024761 lncRNA downstream 19125 45199871 ~ 45200541 (+) True XLOC_011688
TCONS_00024762 lncRNA downstream 167277 45348023 ~ 45349995 (+) True XLOC_011691
TCONS_00023192 mRNA upstream 63107 45106526 ~ 45114519 (+) False XLOC_011686
TCONS_00023193 mRNA upstream 63107 45106706 ~ 45114519 (+) True XLOC_011686
TCONS_00023191 mRNA upstream 63820 45106424 ~ 45113806 (+) False XLOC_011686
TCONS_00023190 mRNA upstream 147601 45010230 ~ 45030025 (+) True XLOC_011685
TCONS_00023188 mRNA upstream 148699 45009868 ~ 45028927 (+) False XLOC_011685
TCONS_00023196 mRNA downstream 78513 45259259 ~ 45302962 (+) False XLOC_011689
TCONS_00023197 mRNA downstream 78524 45259270 ~ 45263464 (+) True XLOC_011689
TCONS_00023198 mRNA downstream 124899 45305645 ~ 45346635 (+) True XLOC_011690
TCONS_00023199 mRNA downstream 215100 45395846 ~ 45402961 (+) False XLOC_011692
TCONS_00023201 mRNA downstream 224012 45404758 ~ 45410653 (+) False XLOC_011693
TCONS_00023189 other upstream 165770 45010043 ~ 45011856 (+) False XLOC_011685
TCONS_00023179 other upstream 886106 44291405 ~ 44291520 (+) True XLOC_011677
TCONS_00023173 other upstream 1235575 43941937 ~ 43942051 (+) True XLOC_011671
TCONS_00023158 other upstream 1303342 43863732 ~ 43874284 (+) False XLOC_011668
TCONS_00023133 other upstream 3417701 41759808 ~ 41759925 (+) True XLOC_011645
TCONS_00023200 other downstream 215348 45396094 ~ 45402959 (+) True XLOC_011692
TCONS_00023207 other downstream 291908 45472654 ~ 45475249 (+) False XLOC_011696
TCONS_00023216 other downstream 458596 45639342 ~ 45646531 (+) True XLOC_011699
TCONS_00023224 other downstream 566937 45747683 ~ 45748668 (+) False XLOC_011701
TCONS_00023226 other downstream 627407 45808153 ~ 45808248 (+) True XLOC_011702

Expression Profile

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